Table 1.
List of predicted p53-REs mapped nearby miR genes
| miR name | p53-RE Genomic location | p53-RE distance miRNA | Overlapping transcript | Distance from sense transcript TSS |
p53- RE organization |
||
|---|---|---|---|---|---|---|---|
| DIMER 1 | Spacer | DIMER 2 | |||||
|
Consensus |
- |
- |
- |
- |
RRRCATGYYY |
N = 0 - 13 |
RRRCATGYYY |
| miR-34a |
Chr 1 - 9242203 |
- 30,476 bp |
Intergenic |
+ 123 bp |
GGGCTTGCCT |
- |
GGGCTTGTTC |
| miR-10b |
Chr 2 - 177013750 |
- 1,281 bp |
HOXD3 |
+ 12,065 bp |
TAACTCGTTG |
GCTTTGACCTGTCT |
GAACAAGTCG |
| miR-23b |
Chr 9 - 97818687 |
- 28,803 bp |
C9orf3 |
+ 135 bp |
AGGTCAGTCA |
TG |
GGACATGTCC |
| miR-106a |
Chr X - 133309906 |
- 5,678 bp |
Intergenic |
- |
GTTATGTTC |
ATGTGCTCAT |
GTGCATGCCC |
| miR-145 |
Chr 5 - 148786372 |
- 23,837 bp |
Intergenic |
+ 68 bp |
GCACCCGCCT |
CGCCCCAATACG |
GGGCTTGCCT |
| miR-151a |
Chr 8 - 141734774 |
- 2,349 bp |
PTK2 |
- 75,874 bp |
TGGCTTGTTT |
- |
TGGCAAGTTC |
| miR-191 |
Chr 3 - 49063594 |
- 5,543 bp |
DARLD3 |
+ 5,103 bp |
GACCTTGTCT |
TGCTTCC |
AGCCATGTCA |
| miR-198 |
Chr 3 - 120112741 |
+ 1,774 bp |
FSTL1 |
- 57,359 bp |
AGGCAAGCTT |
- |
CAACAAGCCG |
| miR-202 |
Chr 10 - 135058647 |
+ 2,368 bp |
RP13-49115.5 |
- 2,748 bp |
GGGCATGTCT |
- |
TGGCAAGCCT |
| miR-221 |
Chr X - 45599946 |
+ 5,639 bp |
Intergenic |
- |
GAACATGCAT |
- |
GCACATGTTT |
| miR-455 |
Chr 9 - 116880600 |
- 91,114 bp |
COL27A1 |
- 49,395 bp |
CTTCCTGCAT |
AAGGCTTGGCGG |
GCGCAAGCCC |
| miR-320a |
Chr 8 - 22095461 |
+ 7,014 bp |
Intergenic |
- |
AGGCATGGTG |
- |
CGGCATGCCT |
| miR-328 |
Chr 16 - 67331546 |
- 95,322 bp |
ELMO3 |
+ 98,475 bp |
CGGCAAGTCC |
C |
CAGCCAGTTC |
| miR-671 |
Chr 7 - 150896632 |
- 38,875 bp |
CHPF2 |
- 32,953 bp |
GGTCCAGCCC |
TCTGGCCCCC |
CAACAAGTCT |
| miR-1204 |
Chr 8 - 128808017 |
- 191 bp |
PVT1 |
+ 1,238 bp |
CGACAAGTTG |
- |
AGACTTGTTC |
| miR-1206 | Chr 8 - 129002467 | - 18,677 bp | PVT1 | + 1,037 bp | GGGCTAGTGA | - | AGGCATGTCT |
miR name, genomic location of the predicted p53-RE (including chromosome number and genomic coordinates according to BLAT tool in UCSC Genome Browser, http://genome.ucsc.edu/), presence and distance from an overlapping primary transcript, p53 RE sequence and position relative to the miR sequence (obtained through the miRBase tool, http://www.mirbase.org/) are presented. p53-RE organization is shown grouping nucleotides in Dimer 1, Spacer (if any) and Dimer 2, according to the p53 consensus (in bold).