Table 2. Identification of HPV16 and other HPVs with homonymous and non homonymous sequences.

		Cloned HPV tested
		16			66			16+66			16+66+51+108
Species	TiledHPV	Call ratevaluea	NBlastscore	HPVidentified	Call ratevaluea	NBlastscore	HPVidentified	Call ratevaluea	NBlastscore	HPVidentified	Call ratevaluea	NBlastscore	HPVidentified
α5	51	15.2	Neg	N.A.	12.8	Neg	N.A.	22.5	Neg	N.A.	94.4	749	51
	82	18.7	Neg	N.A.	13.0	53.6	66	21.7	Neg	N.A.	45.3	147	51
α6	56	24.1	Neg	N.A.	41.4	134	66	46.6	75.2	66	46.0	118	66
	53	17.1	Neg	N.A.	31.9	59	66	34.7	Neg	N.A.	38.5	69.8	66
	66	28.4	Neg	N.A.	95.4	751	66	91.3	677	66	95.4	751	66
	30	26.9	51.8	16	29.9	101	66	41.9	145	66	36.9	205	66
α7	45	21.6	53.6	16	12.9	Neg	N.A.	25.3	59	Und.	22.4	60.8	Und.
	59	23.9	44.6	16	10.3	Neg	N.A.	25.6	Neg	N.A.	26.4	41	16
α9	16	94.9	767	16	23.1	77	66	90.3	688	16	94.9	767	16
	33	25.2	50	16	20.7	44.6	66	32.4	44.6	16	32.6	94.5	16
	35	29.6	Neg	N.A.	14.8	59	66	33.8	101	16	30.8	64.4	16
α10	74	22.8	46.4	16	9.8	Neg	N.A.	22.9	44.6	16	22.6	48.2	16
α13	54	23.3	44.6	16	12.7	Neg	N.A.	24.4	46.4	Und.	24.6	50	Und.
γ6	108	18.1	Neg	N.A.	14.1	Neg	N.A.	18.9	Neg	N.A.	97.7	809	108

^aRatio between the number of bases determined and the sequence length.

Values in bold correspond to the call rate value, NBlast score and result of BLAST of HPVs tested with the homonymous sequence. Neg: Negative; N.A: Not applicable; Und.: Undetermined.