Table 3. Identification of HPV18 and other HPVs with homonymous and non homonymous sequences.

		Cloned HPV
		18			18+45			18+53			18+53+6+42
Species	TiledHPV	Call ratevaluea	NBlastscore	HPVidentified	Call ratevaluea	NBlastscore	HPVidentified	Call ratevaluea	NBlastscore	HPVidentified	Call ratevaluea	NBlastscore	HPVidentified
α1	42	11.2	Neg	N.A.	12.5	Neg	N.A.	23.5	Neg	N.A.	96.6	780	42
α6	53	4	Neg	N.A.	9.5	Neg	N.A.	92.7	702	53	93.6	717	53
	56	10.6	Neg	N.A.	18.0	Neg	N.A.	28.0	46.4	53	29.5	41	53
α7	18	96.6	801	18	93.7	751	18	89.1	666	18	94.5	765	18
	45	47.9	168	18	94.2	764	45	31.3	136	18	52.9	204	18
	59	20.2	Neg	N.A.	27.5	46.4	Und.	17.0	Neg	N.A.	26.9	Neg	N.A.
	68	20.8	75.2	18	28.3	123	18	22.7	57.2	18	27.8	128	18
	70	21.4	Neg	N.A.	31.9	62.8	45	23.1	51.8	53	31.5	Neg	N.A.
	97	41.0	112	18	63.0	262	45	29.4	Neg	N.A.	51.9	211	18
α8	40	17.2	Neg	N.A.	26.0	Neg	N.A.	14.3	Neg	N.A.	20.0	Neg	N.A.
	43	11.5	Neg	N.A.	27.7	55.4	Und.	13.2	Neg	N.A.	23.0	42.8	Und.
α9	16	17.1	46.4	18	21.8	51.8	18	16.9	Neg	N.A.	32.6	77	6
	31	15.0	69.8	18	23.3	64.4	Und	19.9	57.2	53	28.8	122	Und.
	33	14.5	Neg	N.A.	21.7	50	18	19.4	42.8	53	26.4	66.2	6
	35	16.5	Neg	N.A.	25.3	46.4	18	17.3	Neg	N.A.	38.3	48.2	42
	58	10.6	Neg	N.A.	16.6	Neg	N.A.	13.2	Neg	N.A.	20.2	Neg	N.A.
	67	23.0	62.6	18	26.4	112	18	18.9	Neg	N.A.	32.1	98.2	18
α10	6	17.4	54.8	18	21.3	60.8	Und.	23.0	Neg	N.A.	94.7	758	6
α11	73	15.9	Neg	N.A.	19.2	57.2	18	13.4	Neg	N.A.	29.2	42.8	18
α13	54	21.1	Neg	N.A.	28.2	103	45	16.8	Neg	N.A.	34.1	Neg	N.A.

^aRatio between the number of bases determined and the sequence length.

Values in bold correspond to the call rate value, NBlast score and result of BLAST of HPVs tested with the homonymous sequence. Neg: Negative; N.A: Not applicable; Und.: Undetermined.