Table 3.
Percent nucleotide identity of concatenated Gag-Pol-Env-Nef sequences along the coding region for SIVrtg_Kib and other major SIV lineages
|
Nucleotide identity [%] | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SIV strains | rtg_Kib | mus-1 | mus-2 | deb | tal | cpz | syk | mnd-2 | agm | rcm | smm | lst | col |
|
rtg_Kib |
100 |
|
|
|
|
|
|
|
|
|
|
|
|
|
mus-1 |
63.2 |
100 |
|
|
|
|
|
|
|
|
|
|
|
|
mus-2 |
62.6 |
75.1 |
100 |
|
|
|
|
|
|
|
|
|
|
|
deb |
55.1 |
55.3 |
54.9 |
100 |
|
|
|
|
|
|
|
|
|
|
tal |
57.5 |
56.6 |
56.1 |
57.8 |
100 |
|
|
|
|
|
|
|
|
|
cpz |
56.1 |
56.4 |
56.5 |
52.5 |
52.3 |
100 |
|
|
|
|
|
|
|
|
syk |
54.4 |
53.1 |
54.3 |
59.8 |
56.1 |
51.1 |
100 |
|
|
|
|
|
|
|
mnd-2 |
52.3 |
52.0 |
52.3 |
54.0 |
54.6 |
54.3 |
53.0 |
100 |
|
|
|
|
|
|
agm |
53.6 |
51.9 |
52.5 |
53.8 |
55.6 |
52.5 |
54.5 |
57.6 |
100 |
|
|
|
|
|
rcm |
52.7 |
51.7 |
51.7 |
53.8 |
54.8 |
54.5 |
54.0 |
63.9 |
59.0 |
100 |
|
|
|
|
smm |
52.8 |
52.7 |
53.1 |
55.1 |
55.5 |
52.7 |
54.0 |
59.2 |
58.4 |
61.4 |
100 |
|
|
|
lst |
50.8 |
50.0 |
50.1 |
52.1 |
52.4 |
50.3 |
51.9 |
57.0 |
55.1 |
55.5 |
55.1 |
100 |
|
| col | 47.8 | 48.1 | 47.4 | 48.5 | 47.6 | 47.9 | 47.0 | 49.4 | 49.3 | 48.9 | 48.8 | 48.8 | 100 |