Table 1. Summary of Four LC–MS/MS Runs (Two Biological Replicates and Two Technical Replicates).

analysis	no. spectra used	no. unique peptide	no. unique protein	no. unique protein (≥2 peptides)
batch1, run1	161811	32097	2583	2194
batch1, run2	118063	25713	2400	1975
batch2, run1	102264	24721	2340	1926
batch2, run2	92521	23353	2390	1888