Table 1.
Small Hsp family of Physcomitrella patens
| Protein | Transcript | Phypa_v1.6 | Phypa_v1.1 | Scaffold | O | ORF | MW_(kDa) | Loc |
|---|---|---|---|---|---|---|---|---|
| PpHsp21.5 |
Pp1s129_85V6.1 |
Phypa_444537 |
Phypa_216427 |
Scaffold 129:..572968..-..574083 |
+ |
190 |
21.5 |
nuc/cyto |
| PpHsp20.1 |
Pp1s20_253V6.1 |
Phypa_427505 |
Pp1s20_253V6.1 |
Scaffold 20:..1742974..-..1743985 |
+ |
180 |
20.1 |
cyto |
| PpHsp19.4 |
Pp1s350_28V6.1 |
Phypa_458371 |
Phypa_199029 |
Scaffold 350:..287956..-..288477 |
+ |
173 |
19.4 |
cyto |
| PpHsp19.2 |
Pp1s50_96V6.1 |
Phypa_74946 |
Phypa_74946 |
Scaffold 50:..1002205..-..1002857 |
+ |
169 |
19.2 |
cyto |
| PpHsp22.0 |
Pp1s194_15V6.1 |
Phypa_220338 |
Phypa_220338 |
Scaffold 194:..62465..-..63601 |
- |
195 |
22.0 |
cyto |
| PpHsp22.5 |
Pp1s77_290V6.1 |
Phypa_438264 |
Phypa_38520 |
Scaffold 77:..1524105..-..1525479 |
+ |
203 |
22.5 |
chlo |
| PpHsp18.4b |
Pp1s144_148V6.1 |
Phypa_446028 |
Phypa_138125 |
Scaffold 144:..1053435..-..1053920 |
+ |
161 |
18.4 |
cyto |
| PpHsp18.4a |
Pp1s11_289V6.1 |
Phypa_425098 |
Phypa_114905 |
Scaffold 11:..2264806..-..2266292 |
+ |
161 |
18.4 |
cyto |
| PpHsp13.4 |
Pp1s182_60V6.1 |
Phypa_141732 |
Phypa_141732 |
Scaffold 182:..494077..-..494645 |
+ |
121 |
13.4 |
cyto |
| PpHsp12.5 |
Pp1s3_114V6.1 |
Phypa_64616 |
Phypa_64616 |
Scaffold 3:..718664..-..719270 |
- |
111 |
12.5 |
nucl |
| PpHsp16.4b |
Pp1s27_332V6.1 |
Phypa_428984 |
Phypa_70357 |
Scaffold 27:..2270773..-..2272356 |
- |
147 |
16.4 |
cyto |
| PpHsp16.4a |
Pp1s27_331V6.1 |
Phypa_428883 |
Phypa_205434 |
Scaffold 27:..2261849..-..2263432 |
+ |
147 |
16.4 |
cyto |
| PpHsp17.2c |
Pp1s85_11V6.1 |
Phypa_439482 |
Phypa_213039 |
Scaffold 85:..60370..-..61284 |
- |
154 |
17.2 |
cyto |
| PpHsp17.3b |
Pp1s372_62V6.1 |
Phypa_459035 |
Phypa_199515 |
Scaffold 372: 273630 - 274513 |
+ |
154 |
17.3 |
cyto |
| PpHsp17.8 |
Pp1s380_17V6.1 |
Phypa_459300 |
Phypa_37582 |
Scaffold 380:..166713..-..167180 |
+ |
155 |
17.8 |
cyto |
| PpHsp17.6 |
Pp1s105_133V6.1 |
Phypa_442034 |
Phypa_133671 |
Scaffold 105:..890756..-..891525 |
+ |
156 |
17.6 |
cyto |
| PpHsp17.3a |
Pp1s8_86V6.1 |
Phypa_424252 |
Phypa_174654 |
Scaffold 8: 747337 - 748527 |
+ |
155 |
17.3 |
chlo |
| PpHsp17.2b |
Pp1s8_249V6.1 |
Phypa_424267 |
Phypa_158998 |
Scaffold 8:..2505191..-..2506195 |
- |
153 |
17.2 |
chlo |
| PpHsp17.2d |
Pp1s8_209V6.1 |
Phypa_424256 |
Phypa_65913 |
Scaffold 8:..2007522..-..2008526 |
+ |
153 |
17.2 |
chlo |
| PpHsp17.2a |
Pp1s8_244V6.1 |
Phypa_424313 |
Phypa_113859 |
Scaffold 8:..2415925..-..2416902 |
+ |
153 |
17.2 |
chlo |
| PpHsp27.5 |
Pp1s97_106V6.1 |
Phypa_440946 |
Phypa_81689 |
Scaffold 97: 716468 - 718213 |
+ |
246 |
27.5 |
chlo |
| PpHsp27.3 | Pp1s38_338V6.1 | Phypa_72790 | Phypa_72790 | Scaffold 38: 1916174 - 1917189 | + | 242 | 27.3 | mito |
Protein names were assigned according to their molecular weight (MW) in kiloDaltons (kDa) of the deduced proteins. Transcript name and the Phypa number from Phytozome database are listed for the Phycomitrella patens genome v1.1 and the genome v1.6. Scaffold values represent the genomic position of the genes. O: orientation, ORF: number of amino acids from the open reading frame, Loc: deduced subcellular localization (nuc: nuclear; cyto: cytosolic; chlo: chloroplastic).