Table 4.
KGML subtypes and the corresponding SBML Qual sign attributes and SBO identifiers
| KGML subtype | SBML Qual sign | SBO identifier | SBO name |
|---|---|---|---|
| activation |
positive |
SBO:0000170 |
stimulation |
| inhibition |
negative |
SBO:0000169 |
Inhibition |
| expression |
positive |
SBO:0000170 |
stimulation |
| repression |
negative |
SBO:0000169 |
inhibition |
| indirect effect |
unknown |
SBO:0000344 |
molecular interaction |
| state change |
unknown |
SBO:0000168 |
control |
| binding/association |
unknown |
SBO:0000177 |
non-covalent binding |
| dissociation |
unknown |
SBO:0000177 |
non-covalent binding |
| missing interaction |
unknown |
SBO:0000396 |
uncertain process |
| phosphorylation |
unknown |
SBO:0000216 |
phosphorylation |
| dephosphorylation |
unknown |
SBO:0000330 |
dephosphorylation |
| glycosylation |
unknown |
SBO:0000217 |
glycosylation |
| ubiquitination |
unknown |
SBO:0000224 |
ubiquination |
| methylation | unknown | SBO:0000214 | methylation |