Table 3.
Average methylation levels of genome, genes, and transposable elements
| Methylation level* | FLM | FB | ECM | 5-aza treated | 5-aza untreated | |
|---|---|---|---|---|---|---|
|
Genome |
CG |
30.3% |
28.9% |
6.4% |
26.4% |
25.3% |
|
CHG |
8.1% |
8.9% |
3.4% |
7.3% |
8.3% |
|
|
CHH |
10.1% |
10.3% |
3.3% |
8.8% |
9.9% |
|
|
Gene |
CG |
0.64% |
0.87% |
0.84% |
0.68% |
0.68% |
|
CHG |
0.36% |
0.61% |
0.82% |
0.39% |
0.41% |
|
|
CHH |
0.39% |
0.63% |
0.95% |
0.43% |
0.44% |
|
| TE |
CG |
70.51% |
69.71% |
59.16% |
72.87% |
72.89% |
|
CHG |
14.85% |
16.50% |
15.31% |
13.99% |
16.97% |
|
| CHH | 17.27% | 17.85% | 17.30% | 16.11% | 19.24% | |
ECM: ECtoMycorrhiza; FB: FruitBody; FLM: Free-Living Mycelium.
*The methylation level is estimated based on all cytosines with reads coverage > = 4 in each sample.