Table 3.
Gene Selected with sGCCA-Design 1
| Probe Set ID | Gene title | Gene symbol | Regulation in AR |
|---|---|---|---|
| 234312_s_at | acyl-CoA synthetase short-chain family member 2 | ACSS2 | Up |
| 228758_at | B-cell CLL/lymphoma 6 | BCL6 | Up |
| 202592_at | biogenesis of lysosomal organelles complex-1, subunit 1 | BLOC1S1 | Up |
| 204495_s_at | chromosome 15 open reading frame 39 | C15orf39 | Up |
| 1554016_a_at | chromosome 16 open reading frame 57 | C16orf57 | Up |
| 235568_at | chromosome 19 open reading frame 59 | C19orf59 | Up |
| 212463_at | CD59 molecule, complement regulatory protein | CD59 | Up |
| 208052_x_at | carcinoembryonic antigen-related cell adhesion molecule 3 | CEACAM3 | Up |
| 210789_x_at | carcinoembryonic antigen-related cell adhesion molecule 3 | CEACAM3 | Up |
| 219183_s_at | cytohesin 4 | CYTH4 | Up |
| 214017_s_at | DEAH (Asp-Glu-Ala-His) box polypeptide 34 | DHX34 | Up |
| 201536_at | dual specificity phosphatase 3 | DUSP3 | Up |
| 222483_at | EF-hand domain family, member D2 | EFHD2 | Up |
| 221755_at | EH domain binding protein 1-like 1 | EHBP1L1 | Up |
| 216950_s_at | Fc fragment of IgG, high affinity Ia, receptor (CD64) /// Fc fragment of IgG, high affinity Ic, receptor (CD64) | FCGR1A /// FCGR1C | Up |
| 214511_x_at | Fc fragment of IgG, high affinity Ib, receptor (CD64) | FCGR1B | Up |
| 205418_at | feline sarcoma oncogene | FES | Up |
| 208749_x_at | flotillin 1 | FLOT1 | Up |
| 210142_x_at | flotillin 1 | FLOT1 | Up |
| 220404_at | G protein-coupled receptor 97 | GPR97 | Up |
| 224807_at | GRAM domain containing 1A | GRAMD1A | Up |
| 205936_s_at | hexokinase 3 (white cell) | HK3 | Up |
| 39402_at | interleukin 1, beta | IL1B | Up |
| 210184_at | integrin, alpha X (complement component 3 receptor 4 subunit) | ITGAX | Up |
| 210629_x_at | leukocyte specific transcript 1 | LST1 | Up |
| 211581_x_at | leukocyte specific transcript 1 | LST1 | Up |
| 211582_x_at | leukocyte specific transcript 1 | LST1 | Up |
| 215633_x_at | leukocyte specific transcript 1 | LST1 | Up |
| 218376_s_at | microtubule associated monoxygenase, calponin and LIM domain containing 1 | MICAL1 | Up |
| 205323_s_at | metal-regulatory transcription factor 1 | MTF1 | Up |
| 219862_s_at | nuclear prelamin A recognition factor | NARF | Up |
| 233072_at | netrin G2 | NTNG2 | Up |
| 238327_at | outer dense fiber of sperm tails 3B | ODF3B | Up |
| 1554503_a_at | osteoclast associated, immunoglobulin-like receptor | OSCAR | Up |
| 219394_at | phosphatidylglycerophosphate synthase 1 | PGS1 | Up |
| 219066_at | phosphopantothenoylcysteine decarboxylase | PPCDC | Up |
| 201482_at | quiescin Q6 sulfhydryl oxidase 1 | QSOX1 | Up |
| 225251_at | RAB24, member RAS oncogene family | RAB24 | Up |
| 217762_s_at | RAB31, member RAS oncogene family | RAB31 | Up |
| 240862_at | RAS guanyl releasing protein 4 | RASGRP4 | Up |
| 217728_at | S100 calcium binding protein A6 | S100A6 | Up |
| 203535_at | S100 calcium binding protein A9 | S100A9 | Up |
| 205241_at | SCO cytochrome oxidase deficient homolog 2 (yeast) | SCO2 | Up |
| 209370_s_at | SH3-domain binding protein 2 | SH3BP2 | Up |
| 211250_s_at | SH3-domain binding protein 2 | SH3BP2 | Up |
| 210569_s_at | sialic acid binding Ig-like lectin 9 | SIGLEC9 | Up |
| 220371_s_at | solute carrier family 12 (potassium/chloride transporters), member 9 | SLC12A9 | Up |
| 204099_at | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 | SMARCD3 | Up |
| 204858_s_at | thymidine phosphorylase | TYMP | Up |
| 203234_at | uridine phosphorylase 1 | UPP1 | Up |
| 229743_at | zinc finger protein 438 | ZNF438 | Up |
| 1552497_a_at | SLAM family member 6 | SLAMF6 | Down |
| 1553681_a_at | perforin 1 (pore forming protein) | PRF1 | Down |
| 202206_at | ADP-ribosylation factor-like 4C | ARL4C | Down |
| 205171_at | protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) | PTPN4 | Down |
| 205291_at | interleukin 2 receptor, beta | IL2RB | Down |
| 205758_at | CD8a molecule | CD8A | Down |
| 210606_x_at | killer cell lectin-like receptor subfamily D, member 1 | KLRD1 | Down |
| 210972_x_at | T cell receptor alpha locus /// T cell receptor alpha constant /// T cell receptor alpha joining 17 /// T cell receptor alpha variable 20 | TRA@ /// TRAC /// TRAJ17 /// TRAV20 | Down |
| 211597_s_at | HOP homeobox | HOPX | Down |
| 212656_at | Ts translation elongation factor, mitochondrial | TSFM | Down |
| 216920_s_at | TCR gamma alternate reading frame protein /// T cell receptor gamma constant 2 | TARP /// TRGC2 | Down |
| 219034_at | poly (ADP-ribose) polymerase family, member 16 | PARP16 | Down |
| 221011_s_at | limb bud and heart development homolog (mouse) | LBH | Down |
| 222482_at | single stranded DNA binding protein 3 | SSBP3 | Down |
Only the most differentially expressed between AR and NR for a p value<0.05 (FDR correction).