Table 1.
Summary statistics of sequencing runs and read processing
|
Total number |
Total number |
Mean read |
Modal (most frequent) |
Read length |
---|---|---|---|---|---|
of reads | of bases | length | read length | range | |
Total Raw 454 reads |
2,428,740 |
1,444,989,971 |
595 |
546 |
49 – 1,201 |
Total Cleaned 454 reads |
1,620,029 |
864,494,207 |
534 |
523 |
60 – 994 |
Raw Illimina Norm #1 |
41,062,198 |
3,079,664,850 |
75 |
75 |
75 |
Raw Illimina Norm #2 |
41,396,915 |
3,104,768,625 |
75 |
75 |
75 |
Raw Illimina d2 #1 |
40,461,887 |
3,034,641,525 |
75 |
75 |
75 |
Raw Illimina d2 #2 |
42,713,246 |
3,203,493,450 |
75 |
75 |
75 |
Raw Illimina d12 #1 |
42,485,405 |
3,186,405,375 |
75 |
75 |
75 |
Raw Illimina d12 #2 |
42,718,652 |
3,203,898,900 |
75 |
75 |
75 |
Raw Illimina d20 #1 |
38,333,067 |
2,874,980,025 |
75 |
75 |
75 |
Raw Illimina d20 #2 |
42,759,841 |
3,206,988,075 |
75 |
75 |
75 |
Total Raw Illumina |
331,931,211 |
24,894,840,825 |
75 |
75 |
75 |
Cleaned Illimina Norm #1 |
30,668,029 |
1,760,422,119 |
57 |
61 |
32 – 61 |
Cleaned Illimina Norm #2 |
29,685,397 |
1,717,566,430 |
58 |
61 |
32 – 61 |
Cleaned Illimina d2 #1 |
28,982,010 |
1,648,498,857 |
57 |
61 |
32 – 61 |
Cleaned Illimina d2 #2 |
30,382,668 |
1,721,162,425 |
57 |
61 |
32 – 61 |
Cleaned Illimina d12 #1 |
33,755,449 |
1,947,272,365 |
58 |
61 |
32 – 61 |
Cleaned Illimina d12 #2 |
33,893,212 |
1,956,101,048 |
58 |
61 |
32 – 61 |
Cleaned Illimina d20 #1 |
29,670,665 |
1,697,625,162 |
57 |
61 |
32 – 61 |
Cleaned Illimina d20 #2 |
29,956,377 |
1,693,992,519 |
57 |
61 |
32 – 61 |
Total Cleaned Illumina | 246,993,807 | 14,142,640,925 | 57 | 61 | 32–61 |