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. 2014 Jun 11;30(12):i26–i33. doi: 10.1093/bioinformatics/btu268

Table 1.

Stability across enzyme replicates

Resolution Corr MDS1
MDS2
NMDS
PM1
PM2
Corr RMSD Corr RMSD Corr RMSD Corr RMSD Corr RMSD
1 Mb 0.981 13.13 0.945 5.54 0.964 5.80 0.965 7.28 0.931 4.92 0.976
500 kb 0.959 10.00 0.942 5.68 0.959 5.67 0.959 7.14 0.913 4.66 0.968
200 kb 0.845 5.64 0.940 3.74 0.945 3.73 0.946 4.01 0.891 3.42 0.958
100 kb 0.605 5.07 0.736 2.53 0.676 2.52 0.666 2.51 0.664 2.76 0.771

Note: For each resolution, the table lists the Spearman correlation the two enzyme replicate datasets, and, for each inference method, the average RMSD and Spearman correlation between pairs of structures inferred from the two datasets. Boldface values correspond to the best RMSD or correlation values among all five methods. In general, higher resolution leads to a lower correlation between pairs of inferred structures.