Table 3.
Numbers of transcripts detected in all comparisons, numbers of differentially expressed transcripts and their proportions
| Comparisons | All detected transcripts | All differentially expressed transcripts (% of all detected transcripts) | Overexpressed transcripts | |||
|---|---|---|---|---|---|---|
|
Between origins |
|
(p < 0.05) |
(FDR 5%) |
(FDR 10%) |
MR |
GRB |
|
T0 |
2179 |
883 (41%) |
898 (41%) |
1144 (53%) |
504 (57%) |
379 (43%) |
|
BW |
1633 |
259 (16%) |
18 (1%) |
75 (5%) |
116 (45%) |
143 (55%) |
|
FW |
2094 |
422 (20%) |
140 (7%) |
249 (12%) |
194 (46%) |
228 (54%) |
|
Between environments |
|
|
|
|
BW |
FW |
|
MR |
1400 |
453 (32%) |
341 (24%) |
469 (34%) |
226 (50%) |
227 (50%) |
| GRB | 1794 | 501 (28%) | 326 (18%) | 581 (32%) | 263 (53%) | 238 (47%) |
Legend: T0 is the comparison between glass eels captured at the river mouth prior to the beginning of the rearing experiment. GRB is for glass eels and elvers captured at the Grande-Rivière-Blanche river mouth and MR from Mira River. Glass eel were then reared in brackish water (BW) or fresh water (FW). All detected transcripts are the cDNA spots from the printed 6144 on the microarrays slide. Numbers of genes under the p-value are those for which their signal is significantly different between groups in the comparisons and the proportion over all detected transcripts (%). Numbers of genes under the FDR are the ones predicted to be false positives and the proportion over all detected transcripts (%). The numbers of genes in the ‘’Overexpressed transcripts” are those which were over-represented in a group compared to the other and their proportion (%) over the total (p < 0.05).