Table 1.
Overview of projects used from the VAMPS database with their original citation.
| VAMPS project | Habitat | Sample number | Mean Vibrio relative abundance | Geographic location | Salinity | Citation or SRA BioProject accession number |
|---|---|---|---|---|---|---|
| ICM_PML_Bv6 | Seawater | 3 | 0.31 (SE 0.13) | English Channel | Marine | Gilbert et al., 2012 |
| LAZ_MHB_Bv6 | Seawater | 14 | 0.0017 (SE 0.00021) | Northwestern Atlantic | Marine | SRP049014 |
| LAZ_NMS_Bv6 | Saltmarsh | 11 | 0.173 (SE 0.019) | New England, USA | Mixed | SRP059013 |
| SLM_NIH_Bv6 | PAH spiked sand | 11 | 0.012 (SE 0.002) | Gulf of Mexico | Mixed | Kappell et al., 2014 |
| LAZ_SEA_Bv6 | Seawater - associated with plastic | 32 | 0.0036 (SE 0.00058) | Northwestern Atlantic | Marine | SRP026054 %but see Zettler et al., 2013 |
| LAZ_SEA_Bv6 | Plastic-associated | 27 | 0.0032 (SE 0.0005) | Northwestern Atlantic | Marine | SRP026054 %but see Zettler et al., 2013 |
| JCR_SPO_Bv6 | Seawater - associated with sponge | 11 | 0.055 (SE 0.023) | Northeastern Atlantic | Marine | Reveillaud et al., 2014 |
| JCR_SPO_Bv6 | Sponge-associated | 49 | 0.09 (SE 0.014) | Northeastern Atlantic | Marine | Reveillaud et al., 2014 |
| VTS_MIC_Bv6 | Aquarium water - associated with fish | 31 | 0.016 (SE 0.0037) | MBL, Woods Hole, USA | Mixed | SRP047374 (but see Supplementary Data Sheet 1) |
| VTS_MIC_Bv6 | Fish-associated | 20 | 0.3 (SE 0.039) | MBL, Woods Hole, USA | Mixed | SRP047374 (but see Supplementary Data Sheet 1) |
The mean Vibrio relative abundance across all samples in a given project is shown with standard error. For sequences first published by this study the accession numbers for that project's NCBI Sequence Read Archive (SRA) BioProject is given.