Table 5.
Outcome of Blast hit comparison in determining the identity of amplified sequences
| Sample ID | ompB | BLAST hit | 17 kDa | BLAST hit | gltA | BLAST hit | ompA | BLAST hit |
|---|---|---|---|---|---|---|---|---|
| 84154 |
219/222 |
Candidatus R. amblyommii [CP003334/JN378402] |
nd |
|
nd |
|
nd |
|
| |
|
R. helvetica [HQ232249/HQ232247] |
|
|
|
|
|
|
| |
|
R. amblyommii [AF479763] |
|
|
|
|
|
|
| |
|
Uncultured Rickettsia sp. clone CsfC2 [EU407140] |
|
|
|
|
|
|
| 84594 |
424/431 |
Rickettsia sp. T170-B [JQ727680] |
394/394 |
R. raoultii |
nd |
|
nd |
|
| |
|
R. heilongjiangensis [CP002912/AY280712]* |
|
Rickettsia sp. RpA4 |
|
|
|
|
| |
|
Rickettsia sp. IG-1 [EF219461] |
|
Rickettsia sp. ARANHA |
|
|
|
|
| |
|
|
|
Candidatus R. gravesii |
|
|
|
|
| 84607 |
428/431 |
R. slovaca [CP003375/CP002428]* |
392/392 |
Candidatus R. antechini [DQ372953] |
nd |
|
nd |
|
| |
|
R. parkeri [CP003341/FJ644549]* |
392/394 |
R. rickettsii [KC845924/CP003311]* |
|
|
|
|
| |
|
R. sibirica [HM050273/AF123722] |
|
R. parkeri [CP003341/EF689732]* |
|
|
|
|
| |
|
R. conorii [AE006914/AF123726]* |
|
R. philipii [CP003308] |
|
|
|
|
| |
|
Rickettsia sp. BJ-90 [AY331393] |
|
R. peacockii [CP001227/AF260571]* |
|
|
|
|
| |
|
|
|
Rickettsia sp. NOD [EU567178] |
|
|
|
|
| 84609 |
220/222 |
R. slovaca [CP003375/CP002428]* |
392/392 |
Candidatus R. antechini [DQ372953] |
nd |
|
nd |
|
| |
|
R. parkeri [CP003341/FJ644549]* |
392/394 |
R. rickettsii [KC845924/CP003311]* |
|
|
|
|
| |
|
R. rickettsii [CP003311] |
|
R. parkeri [CP003341/EF689732]* |
|
|
|
|
| |
|
R. philipii [CP003308] |
|
R. philipii [CP003308] |
|
|
|
|
| |
|
R. sibirica [HM050273/AF123722] |
|
R. peacockii [CP001227/AF260571]* |
|
|
|
|
| |
|
R. conorii [AE006914/AF123726]* |
|
Rickettsia sp. NOD [EU567178] |
|
|
|
|
| |
|
R. mongolotimonae [DQ097083/AF123715] |
|
|
|
|
|
|
| |
|
Rickettsia sp. BJ-90 [AY331393] |
|
|
|
|
|
|
| |
|
Uncultured Rickettsia sp. clone B3[DQ019321] |
|
|
|
|
|
|
| 84748 |
185/187 |
Candidatus R. hoogstraalii [EF629536] |
392/392 |
Rickettsia sp. Torishima-CC1[AB242434] |
734/734 |
R. endosymbiont [DQ081187] |
nd |
|
| |
|
|
387/387** |
Rickettsia sp. Scc31 [DQ105801] |
|
|
|
|
| |
|
|
386/386** |
R. endosymbiont [DQ081185] |
|
|
|
|
| |
|
|
382/382** |
Candidatus R. hoogstraalii [FJ767736] |
|
|
|
|
| 84751 |
427/431 |
Rickettsia sp. T170 [JQ727680] |
394/394 |
Rickettsia sp. LON-13 [AB516961] |
791/791 |
Rickettsia sp. Mie180 [JQ697958] |
584/587 |
Rickettsia sp. HlR/D91 [KC888951] |
| |
|
R. heilongjiangensis [CP002912/AY280712]* |
|
Rickettsia sp. LON-2 [AB516960] |
|
Rickettsia sp. LON-13 [AB516964] |
583/587 |
Rickettsia sp. FUJ98 [AF169629] |
| |
|
|
|
R. marmionii [AY737683] |
|
|
485/488** |
Rickettsia sp. LON-13 [AB516963] |
| |
|
|
|
Rickettsia sp. Hf151 [AB114816] |
|
|
|
|
| |
|
|
|
Rickettsia sp. Hl550 [AB114805] |
|
|
|
|
| 113618 | 222/222 | R. monacensis [JX625150] | nd | nd | nd |
*Two examples **The deponated sequence at NCBI GenBank is shorter than our sequence.