. 2014 Nov 14;5:565. doi: 10.3389/fpls.2014.00565

Table 2.

Plant treatment-specific enrichment^a of differentially expressed genes within functional GO groups for biological processes associated with abiotic and biotic factors (^*p ≤ 0.05 for modified Fisher's exact test, ^**p ≤ 0.05 with Benjamini-Hochberg adjustment for multiple comparisons).

Biological process GO annotation	Plant treatment
Biological process GO annotation			6 h local			6 h systemic			24 h Local			24 h systemic			6 h		24 h
Identity	Type of process	Pr	Se	Wo	Pr	Se	Wo	Pr	Se	Wo	Pr	Se	Wo	Bb	Mp	Bb	Mp
0006955	Immune response											^**		^*		^**	^**
0050832	Defense response to fungus			^*		^*										^**
0009617	Response to bacterium	^*				^**	^*
0009409	Response to cold								^**			^**				^**
0009267	Cellular response to starvation								^**
0031667	Response to nutrient levels							^*	^*
0009746	Response to hexose stimulus	^*		^*					^*		^*	^*			^*
0010038	Response to metal ion							^*							^**		^*
0009651	Response to salt stress							^**		^*		^**
0006970	Response to osmotic stress							^*	^*			^**
0000302	Response to reactive oxygen						^*		^*						^**
0009314	Response to radiation							^*					^*		^**
0009642	Response to light intensity							^*					^*		^**
0010114	Response to red light													^*

Abbreviations for plant treatment names are the same as those used in Table 1. See Supplemental Table 3 for annotation details.

Functional enrichment was performed using the DAVID Functional Annotation Clustering and gene annotations of A. thaliana.