Table 2.
Detailed whole genome sequencing results of the 18 Listeria monocytogenes serovar 1/2b genomes and European Nucleotide Archive (ENA) sample accession numbers (study accession no. PRJEB5481)
| Isolate ID | No. of assembled reads | No. of consensus sequence nucleotides (bp) | No. of contigs | Average coverage | No. of deduced genesa | ENA sample accession no. |
|---|---|---|---|---|---|---|
| AT01 | 1 113 738 | 3 011 773 | 49 | 55.0 | 2406 | ERS406789 |
| AT02 | 1 354 880 | 3 013 172 | 44 | 66.8 | 2429 | ERS407319 |
| AT03 | 1 524 321 | 3 012 460 | 36 | 75.5 | 2436 | ERS407320 |
| AT04 | 1 612 866 | 3 025 964 | 44 | 79.4 | 2427 | ERS407321 |
| AT05 | 2 227 840 | 3 014 120 | 39 | 108.7 | 2430 | ERS421601 |
| AT06 | 2 357 928 | 3 012 372 | 44 | 115.9 | 2428 | ERS427372 |
| AT07 | 2 127 139 | 3 014 249 | 41 | 105.1 | 2439 | ERS427979 |
| AT08 | 1 511 647 | 3 013 045 | 41 | 74.5 | 2434 | ERS427980 |
| AT09 | 1 245 078 | 3 012 059 | 49 | 60.7 | 2425 | ERS428001 |
| AT10 | 5 706 271 | 3 015 193 | 51 | 152.6 | 2444 | ERS408418 |
| AT11 | 1 474 303 | 3 008 842 | 41 | 73.0 | 2433 | ERS428003 |
| AT12 | 5 893 062 | 2 931 547 | 75 | 159.2 | 2447 | ERS421884 |
| AT13 | 3 398 658 | 2 986 020 | 42 | 97.0 | 2445 | ERS428004 |
| AT14 | 998 085 | 3 012 269 | 54 | 48.8 | 2393 | ERS428005 |
| AT15 | 5 772 962 | 3 012 616 | 47 | 159.3 | 2445 | ERS428009 |
| AT16 | 974 292 | 3 011 808 | 47 | 48.2 | 2415 | ERS428006 |
| AT17 | 2 222 068 | 3 012 212 | 47 | 109.9 | 2427 | ERS428007 |
| AT18 | 1 726 262 | 3 028 709 | 74 | 136.3 | 2426 | ERS428008 |
a
In a pairwise comparison with L. monocytogenes strain EGD-e (GenBank accession no. NC_003210).