Table 3. GWA scan results for selected essential amino-acid profiles.
| IL-1996 (900)a |
MS-1997 (978) |
||||
|---|---|---|---|---|---|
| SNP | -log (p-value)b | Allelic Effect Estimate | SNP | -log (p-value)b | Allelic Effect Estimate |
| Cysteine (1.47 [1.50])c ; H2 = 0.60 (IL-1996), 0.59 (MS-1997) | |||||
| 8_8462762d,e,f | 5.39 (5.01) | 0.06 | 8_8462762 | 12.33 (12.06) | 0.06 |
| 6_18690983 | 9.87 (8.6) | 0.04 | |||
| 6_17674401 | 4.33 (5.01) | 0.03 | |||
| Lysine (6.41 [6.47]); H2 = 0.61 (IL-1996), 0.66 (MS-1997) | |||||
| 8_8462762 | 11.1 (10.97) | 0.28 | 8_8577294 | 11.01 (9.55) | 0.11 |
| 17_39726391 | 6.96 (6.52) | 0.14 | 12_14812823 | 8.87 (6.04) | 0.1 |
| 1_52249479 | 6.16 (4.79) | 0.08 | 9_41819055 | 6.25 (6.36) | 0.14 |
| 16_28941919 | 4.46 (5.31) | 0.13 | 17_270328 | 6.32 (5.46) | 0.1 |
| 15_23117810 | 5.29 (4.62) | 0.07 | |||
| 19_41918030 | 4.92 (4.72) | 0.09 | |||
| Methionine (1.43 [1.40]); H2 = 0.75 (IL-1996), 0.73 (MS-1997) | |||||
| 11_1657825 | 11.47 (13.47) | 0.08 | 1_52263952 | 7.46 (6.6) | 0.03 |
| 20_694345 | 8.73 (8.86) | 0.1 | 5_29970914 | 6.19 (5.28) | 0.04 |
| 3_3936105 | 7.5 (6.78) | 0.06 | 2_51258638 | 5.03 (4.51) | 0.04 |
| 1_52253980 | 4.88 (5.26) | 0.04 | 20_43025938 | 4.12 (6.42) | 0.04 |
| 16_36220954 | 4.91 (4.88) | 0.05 | 8_8577294 | 6.48 (4.03) | 0.03 |
| 3_40763529 | 4.39 (5.26) | 0.05 | 10_40692799 | 4.21 (4.42) | 0.03 |
| Threonine (3.57 [3.60]); H2 = 0.56 (IL-1996), 0.65 (MS-1997) | |||||
| 8_8627848 | 6.93 (5.51) | 0.08 | 1_52253980 | 10.71 (11.68) | 0.06 |
| 4_6897543 | 4.21 (4.17) | 0.04 | |||
| Sucrose (4.00 [3.83]); H2 = 0.66 (IL-1996), 0.50 (MS-1997) | |||||
| 18_59597832 | 5.19 (4.67) | 0.38 | 5_38495217 | 5.05 (4.99) | 0.35 |
| 15_12181005 | 4.43 (5.05) | 0.29 | |||
| Stachyose (2.89 [2.76]); H2 = 0.27 (IL-1996), 0.40 (MS-1997) | |||||
| 9_2007514 | 5.21 (5.58) | 0.17 | 20_2219331 | 4.05 (4.06) | 0.14 |
a
Population used; value in parentheses is the number of genotypes used.
b
Value from MLMM; parenthetical value from CMLM.
c
Mean values for combined populations are in parentheses, with median values in brackets (% protein by dry weight).
d
Bold font indicates that the marker (or a marker within 200 Kbp) was associated with the trait in two or more environment–population datasets.
e
Italic font indicates that the marker (or a marker within 200 Kbp) was also associated with another trait in the study.
f
For simplicity, marker names are reduced to their chromosome position form, e.g., BARC1.01Gm08_8462762 appears as 8_8462762.