Table 5.
Statistics of QTL that interact with reciprocal cross
| |
|
|
Position |
Flanking markers
c
|
am + dm + im
d
|
am + dm
e
|
am
f
|
||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chr | Trait a | Groups | (cM) b | Left | Right | P -value | % var | P -value | % var | P -value | % var |
| 1 |
Gastro |
pQTL |
23 |
rs3696088 |
rs13472794 |
2.85E-06 |
2.68 |
4.41E-06 |
2.32 |
3.14E-06 |
2.06 |
| 1 |
Pec |
pQTL |
23 |
rs3696088 |
rs13472794 |
1.62E-02 |
0.94 |
7.04E-02 |
0.49 |
5.78E-03 |
0.71 |
| 1 |
Tnni1 |
eQTL |
24 |
rs3696088 |
rs13472794 |
3.03E-02 |
1.14 |
1.25E-02 |
1.12 |
4.84E-03 |
1.02 |
| 1 |
Edl |
pQTL |
25 |
rs3696088 |
rs13472794 |
4.02E-04 |
1.81 |
8.59E-03 |
0.95 |
4.14E-03 |
0.82 |
| 1 |
R |
tQTL |
29 |
rs13472794 |
rs13475931 |
1.09E-05 |
3.50 |
2.03E-02 |
1.09 |
1.10E-01 |
0.36 |
| 1 |
R/D |
tQTL |
29 |
rs13472794 |
rs13475931 |
1.39E-04 |
2.82 |
1.81E-02 |
1.12 |
1.65E-01 |
0.27 |
| 6 |
lengthNA |
pQTL |
63 |
mCV24115224 |
UT_6_123.37228 |
3.24E-02 |
0.87 |
5.46E-02 |
0.58 |
2.81E-02 |
0.48 |
| 7 |
Pec |
pQTL |
47 |
rs3676254 |
rs3656205 |
3.82E-02 |
0.84 |
1.64E-02 |
0.82 |
1.25E-01 |
0.24 |
| 7 |
IGF1 |
eQTL |
53 |
rs13479422 |
rs13479471 |
1.62E-02 |
1.33 |
6.47E-03 |
1.31 |
5.18E-03 |
1.02 |
| 7 |
Tail |
pQTL |
61 |
rs13479471 |
rs6275579 |
3.45E-02 |
0.86 |
5.23E-01 |
0.13 |
6.42E-01 |
0.02 |
| 11 |
Fat |
pQTL |
57 |
rs3701609 |
rs8270290 |
5.27E-02 |
0.77 |
1.76E-02 |
0.81 |
8.18E-02 |
0.31 |
| 11 |
AI |
pQTL |
57 |
rs3701609 |
rs8270290 |
6.46E-02 |
0.72 |
2.18E-02 |
0.76 |
1.06E-01 |
0.26 |
| 13 |
R |
tQTL |
25 |
rs13481780 |
rs3678784 |
1.08E-03 |
2.21 |
2.08E-04 |
2.34 |
1.26E-03 |
1.44 |
| 13 |
R/D |
tQTL |
25 |
rs13481780 |
rs3678784 |
2.05E-03 |
2.02 |
4.71E-04 |
2.12 |
4.36E-03 |
1.13 |
| 14 |
R/D |
tQTL |
18 |
rs13482096 |
rs8251329 |
3.64E-04 |
2.56 |
6.77E-04 |
2.03 |
1.05E-03 |
1.50 |
| 17 | Edl | pQTL | 31 | rs3023442 | rs6395919 | 2.00E-01 | 0.47 | 9.81E-02 | 0.47 | 3.46E-02 | 0.45 |
aTrait abbreviations are the same as in Table 1. R: total RNA; R/D: total RNA/total DNA.
bPeak position of QTL detected in Kosambi centimorgans.
cFlanking markers (left and right) of the QTL peak. See Additional file 1: Table S6 for marker information.
dam + dm + im tested the overall interaction, which included additive, dominance, and imprinted pQTL by cross interactions. P-value < 0.05 is shown in italics % var: percentage of phenotypic variance accounted for at QTL position.
eam + dm tested for non-imprinted interactions, which included additive and dominance pQTL by cross interactions. P-value < 0.05 is shown in italics % var: percentage of phenotypic variance accounted for at QTL position.
fam tested for additive interactions, which included additive QTL by cross interactions. P-value < 0.05 is shown in italics %var: percentage of phenotypic variance accounted for at QTL position.