Table 3.
The primers, polymerase chain reaction (PCR) conditions and restricion enzymes used in this study
| Primer pairs | PCR conditions | Restriction enzymes | ||
|---|---|---|---|---|
| VDR | rs7975232 (ApaI) | 5′-CAGAGCATGGACAGGGAGCAA-3′ 5′-GCAACTCCTCATGGCTGAGGTCTC-3′ | 95°C for 5 min (95°C for 30 s, 70°C for 30 s, 72°C for 60 s) × 35cycles 72°C for 5 min | ApaI |
| rs1544410 (BsmI) | 5′-CAACCAAGACTACAAGTACCGCGTCAGTGA-3′ 5′-AACCAGCGGGAAGAGGTCAAGGG-3′ | 95°C for 3 min (95°C for 30 s, 60°C for 30 s, 72°C for 30 s) × 35cycles 72°C for 5 min | BsmI | |
| rs2228570 (FokI) | 5′-AGCTGGCCCTGGCACTGACTCTGCTCT-3′ 5′-ATGGAAACACCTTGCTTCTTCTCCCTC-3′ | 95°C for 5 min (95°C for 30 s, 61°C for 30 s, 72°C for 30 s) × 35cycles 72°C for 5 min | FokI | |
| rs731236 (TaqI) | 5′-CAGAGCATGGACAGGGAGCAA-3′ 5′-GCAACTCCTCATGGCTGAGGTCTC-3′ | 95°C for 5 min (95°C for 30 s, 70°C for 30 s, 72°C for 60 s) × 35cycles 72°C for 5 min | TaqI | |
| GC | rs7041 | 5′-AAATAATGAGCAAATGAAAGAAGAC-3′ 5′-CAATAACAGCAAAGAAATGAGTAGA-3′ | 95°C for 3 min (95°C for 30 s, 64°C for 30 s, 72°C for 30 s) × 30cycles 72°C for 7 min | HaeIII |
| rs4588 | 5′-AAATAATGAGCAAATGAAAGAAGAC-3′ 5′-CAATAACAGCAAAGAAATGAGTAGA-3′ | 95°C for 3 min (95°C for 30 s, 64°C for 30 s, 72°C for 30 s) × 30cycles 72°C for 7 min | StyI | |
| CYP2R1 | rs10741657 | 5′-GGGAAGAGCAATGACATGGA-3′ 5′-GCCCTGGAAGACTCATTTTG-3′ | 95°C for 5 min (95°C for 30 s, 55°C for 30 s, 72°C for 30 s) × 35cycles 72°C for 5 min | MnlI |