Table 2.

Differential expression analyses for ‘novel’ genes in type 1 diabetes mellitus-related cells

Sample	S1		S2			S3
Target cells	PBMC		CD14+ Monocyte			PBMC
Sample size	46:44		16:6			9:10
Platform	[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array		Illumina HumanHT-12 V3.0 expression beadchip			Phalanx Human One Array (version 4.3)
References	14		15			16
GSE NO.	GSE35725		GSE33440			GSE29142
Gene	Probe ID	t-test P-value	Gene	Probe ID	t-test P-value	Gene	Probe ID	t-test P-value
ATF7IP	207728_at	2.10E-03	FYN	ILMN_1781207	2.64E-02	HIPK1	14,914	3.56E-02
BCAR1	223116_at	4.17E-02	BAK1	ILMN_1805990	6.11E-03	OLFML3	21,862	1.54E-02
FAM46B	229518_at	4.97E-02	IL10	ILMN_2073307	1.05E-02	BAK1	22,739	1.60E-02
FYN	1559101_at	2.01E-03	NCAPD2	ILMN_1775008	1.40E-04	PPP1R11	3205	1.69E-02
GUSBL1	1555568_at	1.40E-02	NSL1	ILMN_1739210	2.27E-02	BRAP	12,945	4.45E-02
HIST1H2BF	208490_x_at	8.84E-03	PHF1	ILMN_1746968	6.98E-03	CRYZL1	24,489	8.59E-03
HIST1H4E	206951_at	4.29E-03	PPP1R10	ILMN_1659058	3.95E-02	GNS	8137	1.83E-03
HMGB1	200679_x_at	1.99E-02	PPP1R11	ILMN_1747598	2.33E-03	HLA-J	24,451	1.63E-02
ITPR3	201187_s_at	4.29E-03	TRIM27	ILMN_1655482	8.79E-03	IKZF3	15,319	1.87E-04
MYL2	209742_s_at	7.58E-03	VPS52	ILMN_1666632	1.32E-02	ORMDL3	10,233	2.96E-02
OLFML3	218162_at	7.24E-03				SULT1A1	20,808	2.61E-02
OR2B6	216522_at	2.65E-03				TMEM129	17,978	4.31E-02
OR5V1	234840_s_at	3.07E-03				ZZEF1	16,832	1.46E-03
PLEKHA1	219024_at	1.04E-02
RASIP1	220027_s_at	3.18E-03
RING1	208371_s_at	4.40E-02
STRN4	217903_at	1.63E-02
ZNF192	206579_at	3.92E-02
CRYZL1	1552347_at	2.78E-02

Only the most significant probe was listed, even if more than one probe was tested or detected for a gene.

GSE NO, Gene Expression Omnibus Number (www.ncbi.nlm.nih.gov/geo/); PBMC, peripheral blood mononuclear cells.