Table 5. Percent amino acid identity of Ls9 and Ls127 L protein domains and subdomains compared with a selection of related rhabdoviruses.
Virus | Entire | Blocks % identity | Subdomains block III (%) | ||||||||
L | I | II | III | IV | V | IV | III-A | III-B | III-C | III-D | |
Ls9 | |||||||||||
VSV | 38.8 | 40.3 | 64.4 | 56.3 | 46.2 | 53.2 | 56.5 | 92.3 | 88.5 | 90.0 | 30.8 |
SVCV | 37.8 | 33.5 | 60.6 | 55.8 | 45.6 | 53.7 | 62.4 | 92.3 | 92.3 | 80.0 | 30.8 |
PFRV | 37.6 | 35.1 | 59.6 | 55.8 | 45.0 | 53.7 | 60.0 | 92.3 | 92.3 | 90.0 | 30.8 |
PRV | 38.0 | 36.1 | 59.6 | 52.7 | 46.8 | 56.7 | 58.3 | 92.3 | 92.3 | 80.0 | 30.8 |
SMRV | 38.9 | 35.6 | 65.4 | 53.6 | 52.0 | 61.0 | 58.8 | 92.3 | 88.5 | 90.0 | 30.8 |
BEFV | 36.1 | 35.1 | 61.5 | 50.9 | 39.2 | 52.8 | 50.6 | 84.6 | 88.5 | 80.0 | 23.1 |
TIBV | 34.7 | 31.4 | 58.6 | 53.1 | 42.7 | 51.9 | 67.9 | 69.2 | 80.8 | 80.0 | 30.8 |
DURV | 36.0 | 38.2 | 65.4 | 52.2 | 46.8 | 46.3 | 63.1 | 76.9 | 92.3 | 80.0 | 30.8 |
WONV | 36.0 | 38.2 | 59.6 | 51.3 | 48.5 | 54.1 | 52.4 | 92.3 | 100.0 | 80.0 | 15.4 |
NGAV | 36.5 | 31.9 | 62.5 | 53.6 | 44.4 | 55.0 | 57.1 | 84.6 | 88.5 | 90.0 | 15.4 |
MOUV | 28.2 | 27.2 | 52.9 | 44.6 | 38.6 | 38.1 | 41.7 | 69.2 | 69.2 | 80.0 | 23.1 |
KOLEV | 35.2 | 36.1 | 62.5 | ||||||||
SIGMAV | 35.3 | 34.6 | 56.7 | 47.8 | 41.5 | 52.8 | 49.4 | 76.9 | 80.8 | 80.0 | 30.8 |
Ls127 | |||||||||||
VSV | 39.0 | 40.3 | 63.5 | 53.6 | 55.0 | 48.9 | 60.0 | 100.0 | 84.6 | 90.0 | 30.8 |
SVCV | 38.1 | 36.6 | 58.7 | 51.8 | 48.5 | 51.1 | 54.1 | 100.0 | 84.6 | 80.0 | 30.8 |
PFRV | 37.3 | 37.2 | 59.6 | 52.2 | 49.7 | 49.4 | 54.1 | 100.0 | 84.6 | 90.0 | 30.8 |
PRV | 37.7 | 37.7 | 61.5 | 50.9 | 52.0 | 54.5 | 47.6 | 84.6 | 84.6 | 80.0 | 30.8 |
SMRV | 39.1 | 35.6 | 62.4 | 47.3 | 54.4 | 55.0 | 56.5 | 100.0 | 84.6 | 90.0 | 30.8 |
BEFV | 35.4 | 34.0 | 59.6 | 50.4 | 44.4 | 47.2 | 44.7 | 100.0 | 84.6 | 80.0 | 30.8 |
TIBV | 34.1 | 33.0 | 55.8 | 47.3 | 47.4 | 46.3 | 58.3 | 61.5 | 76.9 | 80.0 | 23.1 |
DURV | 35.8 | 40.8 | 63.5 | 48.7 | 51.5 | 46.3 | 59.5 | 76.9 | 84.6 | 80.0 | 23.1 |
WONV | 35.1 | 35.1 | 62.5 | 48.2 | 53.2 | 51.5 | 48.8 | 84.6 | 92.3 | 80.0 | 15.4 |
NGAV | 36.8 | 35.6 | 58.7 | 52.2 | 52.0 | 51.9 | 50.0 | 84.6 | 84.6 | 90.0 | 15.4 |
MOUV | 28.4 | 28.3 | 50.0 | 41.5 | 43.3 | 39.0 | 40.5 | 61.5 | 65.4 | 80.0 | 23.1 |
KOLEV | 36.1 | 37.2 | 58.7 | ||||||||
SIGMAV | 35.9 | 37.7 | 55.8 | 46.9 | 46.8 | 48.9 | 50.6 | 76.9 | 76.9 | 80.0 | 38.5 |
Ls9 | 49.4 | 53.4 | 68.3 | 67.9 | 66.7 | 62.8 | 69.4 | 76.9 | 92.3 | 100 | 69.2 |
Vesiculovirus (VSV = Vesicular stomatitis virus (ABP01784)), Sprivivirus (SVCV = Spring viraemia of carp virus (ABW24037) and PFRV = Pike fry rhabdovirus (ACP28002)), Perhabdovirus (PRV = Perch rhabdovirus (AFX72892)), Ephemerovirus (BEFV = Bovine ephemeral fever virus (NP065409)), Sigmavirus (Sigma = Sigma virus (AFV52407)), Tibrovirus (TIBV = Tibrogargan virus (YP007641376)), Tupavirus (DURV = Durham virus (ADB88761)). Unassigned (SMRV = Turbot rhabdovirus (ADU05406), WONV = Wongabel virus (YP002333280), NGAV = Ngaingan virus (YP003518294), MOUV = Moussa virus (ACZ81407), KOLEV = Kolente virus (AHB08865)).