Skip to main content
. 2014 Nov 17;9(11):e112517. doi: 10.1371/journal.pone.0112517

Table 5. Percent amino acid identity of Ls9 and Ls127 L protein domains and subdomains compared with a selection of related rhabdoviruses.

Virus Entire Blocks % identity Subdomains block III (%)
L I II III IV V IV III-A III-B III-C III-D
Ls9
VSV 38.8 40.3 64.4 56.3 46.2 53.2 56.5 92.3 88.5 90.0 30.8
SVCV 37.8 33.5 60.6 55.8 45.6 53.7 62.4 92.3 92.3 80.0 30.8
PFRV 37.6 35.1 59.6 55.8 45.0 53.7 60.0 92.3 92.3 90.0 30.8
PRV 38.0 36.1 59.6 52.7 46.8 56.7 58.3 92.3 92.3 80.0 30.8
SMRV 38.9 35.6 65.4 53.6 52.0 61.0 58.8 92.3 88.5 90.0 30.8
BEFV 36.1 35.1 61.5 50.9 39.2 52.8 50.6 84.6 88.5 80.0 23.1
TIBV 34.7 31.4 58.6 53.1 42.7 51.9 67.9 69.2 80.8 80.0 30.8
DURV 36.0 38.2 65.4 52.2 46.8 46.3 63.1 76.9 92.3 80.0 30.8
WONV 36.0 38.2 59.6 51.3 48.5 54.1 52.4 92.3 100.0 80.0 15.4
NGAV 36.5 31.9 62.5 53.6 44.4 55.0 57.1 84.6 88.5 90.0 15.4
MOUV 28.2 27.2 52.9 44.6 38.6 38.1 41.7 69.2 69.2 80.0 23.1
KOLEV 35.2 36.1 62.5
SIGMAV 35.3 34.6 56.7 47.8 41.5 52.8 49.4 76.9 80.8 80.0 30.8
Ls127
VSV 39.0 40.3 63.5 53.6 55.0 48.9 60.0 100.0 84.6 90.0 30.8
SVCV 38.1 36.6 58.7 51.8 48.5 51.1 54.1 100.0 84.6 80.0 30.8
PFRV 37.3 37.2 59.6 52.2 49.7 49.4 54.1 100.0 84.6 90.0 30.8
PRV 37.7 37.7 61.5 50.9 52.0 54.5 47.6 84.6 84.6 80.0 30.8
SMRV 39.1 35.6 62.4 47.3 54.4 55.0 56.5 100.0 84.6 90.0 30.8
BEFV 35.4 34.0 59.6 50.4 44.4 47.2 44.7 100.0 84.6 80.0 30.8
TIBV 34.1 33.0 55.8 47.3 47.4 46.3 58.3 61.5 76.9 80.0 23.1
DURV 35.8 40.8 63.5 48.7 51.5 46.3 59.5 76.9 84.6 80.0 23.1
WONV 35.1 35.1 62.5 48.2 53.2 51.5 48.8 84.6 92.3 80.0 15.4
NGAV 36.8 35.6 58.7 52.2 52.0 51.9 50.0 84.6 84.6 90.0 15.4
MOUV 28.4 28.3 50.0 41.5 43.3 39.0 40.5 61.5 65.4 80.0 23.1
KOLEV 36.1 37.2 58.7
SIGMAV 35.9 37.7 55.8 46.9 46.8 48.9 50.6 76.9 76.9 80.0 38.5
Ls9 49.4 53.4 68.3 67.9 66.7 62.8 69.4 76.9 92.3 100 69.2

Vesiculovirus (VSV  =  Vesicular stomatitis virus (ABP01784)), Sprivivirus (SVCV  =  Spring viraemia of carp virus (ABW24037) and PFRV  =  Pike fry rhabdovirus (ACP28002)), Perhabdovirus (PRV  =  Perch rhabdovirus (AFX72892)), Ephemerovirus (BEFV  =  Bovine ephemeral fever virus (NP065409)), Sigmavirus (Sigma  =  Sigma virus (AFV52407)), Tibrovirus (TIBV  =  Tibrogargan virus (YP007641376)), Tupavirus (DURV  =  Durham virus (ADB88761)). Unassigned (SMRV  =  Turbot rhabdovirus (ADU05406), WONV  =  Wongabel virus (YP002333280), NGAV  =  Ngaingan virus (YP003518294), MOUV  =  Moussa virus (ACZ81407), KOLEV  =  Kolente virus (AHB08865)).