Table 3.
Number of CpG sites within a given CpG island observed and mean coverage per sequenced CpG
|
Gene |
IGF2R
|
GRB10
|
PEG3
|
MEST
|
RB1
|
KCNQ1
|
GAPDH
|
ACTB
|
|---|---|---|---|---|---|---|---|---|
|
(CpG island location, hg19) |
(chr6:160426265–160427502) |
(chr7:50849753–50850871) |
(chr19:57351284–57351995) |
(chr7:130130740–130133111) |
(chr13:48892636–48893857) |
(chr11:2720411–2722087) |
(chr12:6643262–6644607) |
(chr7:5569063–5570594) |
| CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | |
|
B02 |
38/21.6X |
89/13.0X |
24/29.6X |
99/18.25X |
46/22.0X |
138/18.6X |
109/21.4X |
195/14.2X |
|
D07 |
20/19.3X |
48/10.8X |
24/14.7X |
78/15.2X |
38/16.3X |
77/12.5X |
97/14.6X |
145/10.1X |
|
E08 |
35/25.7X |
99/16.8X |
25/24.8X |
94/25.1X |
46/29.0X |
125/20.5X |
116/19.5X |
206/16.6X |
| G12 | 39/23.0X | 101/14.0X | 30/21.3X | 96/18.3X | 46/29.1X | 130/18.9X | 121/19.5X | 208/15.0X |