Table 4.
Amino acid similarities and identities between ICE Hptfs4a -encoded proteins and proteins from ICE Hptfs3 and ICE Hptfs4b/c islands
| Gene P12 | Size (aa) | Identity/similarity ICE Hptfs4b 1 | Identity/similarity ICE Hptfs4c 1 | Orthologous gene on ICE Hptfs3 | Identity/similarity ICE Hptfs3 1 | Putative function |
|---|---|---|---|---|---|---|
|
hpp12_437 |
357 |
56/73 |
98/98 |
hpb8_521/pz40 |
63/76 |
XerT |
|
hpp12_438 |
227 |
missing |
95/97 |
hpb8_524/pz37 |
77/83 |
|
|
hpp12_439 |
432 |
32/49 |
93/95 |
hpb8_527/pz34 |
23/42
2
|
VirB6 |
|
hpp12_440 |
92 |
missing |
93/96 |
missing |
- |
|
|
hpp12_441 |
466 |
40/60 |
96/97 |
hpb8_526/pz35 |
23/46
2
|
|
|
hpp12_442/443 |
737 |
94/95 |
94/95 |
hpb8_543/pz15 |
32/50 |
|
|
hpp12_444/445 |
464 |
28/46 |
97/993 |
hpb8_529/pz32 |
26/53
4
|
|
|
hpp12_446 |
340 |
28/43 |
95/973 |
hpb8_530/pz31 |
30/47 |
|
|
hpp12_447 |
2808 |
94/96 |
92/95 |
pz21 |
89/93 |
|
|
hpp12_448 |
218 |
98/99 |
97/99 |
hpb8_532/pz29 |
67/81 |
ParA |
|
hpp12_449 |
94 |
98/100 |
94/94 |
hpb8_533/pz28 |
37/69 |
|
|
hpp12_450 |
392 |
92/96 |
missing |
missing |
- |
|
|
hpp12_451 |
637 |
93/95 |
35/51 |
hpb8_519,517/pz41 |
35/56 |
VirD2 |
|
hpp12_452 |
104 |
97/98 |
n.d.5 |
missing |
- |
|
|
hpp12_453 |
93 |
98/100 |
n.d.5 |
missing |
- |
|
|
hpp12_454 |
575 |
98/99 |
62/77 |
hpb8_538/pz20 |
50/66 |
VirD4 |
|
hpp12_455 |
170 |
98/98 |
46/60
6
|
hpb8_538/pz206 |
32/50 |
|
|
hpp12_456 |
96 |
97/98 |
n.d.5 |
missing |
- |
|
|
hpp12_457 |
151 |
97/97 |
35/51 |
missing |
- |
|
|
hpp12_458 |
313 |
99/99 |
58/74 |
hpb8_540/pz18 |
42/64 |
VirB11 |
|
hpp12_459 |
99 |
98/100 |
n.d.5 |
missing |
- |
|
|
hpp12_460 |
87 |
93/96 |
n.d.5 |
missing |
- |
|
|
hpp12_461 |
97 |
97/97 |
91/93 |
missing |
- |
|
|
hpp12_462 |
421 |
80/84 |
92/95 |
hpb8_544/pz14 |
53/69 |
VirB10 |
|
hpp12_463 |
510 |
97/98 |
94/97 |
hpb8_545/pz13 |
47/66 |
VirB9 |
|
hpp12_464 |
389 |
55/73 |
98/99 |
hpb8_546/pz12 |
38/62 |
VirB8 |
|
hpp12_465 |
38 |
55/75 |
55/75 |
hpb8_547/pz11 |
44/58 |
VirB7 |
|
hpp12_466 |
677 |
45/62 |
94/97 |
hpb8_537/pz24 |
45/61 |
TopA |
|
hpp12_467 |
807 |
44/63 |
96/97 |
hpb8_548/pz10 |
38/58 |
VirB4 |
|
hpp12_468 |
88 |
54/75 |
95/97 |
hpb8_550/pz8 |
39/58 |
VirB3 |
|
hpp12_469 |
100 |
42/63 |
93/97 |
hpb8_551/pz7 |
30/45 |
VirB2 |
|
hpp12_470/471 |
508 |
34/54 |
94/96 |
hpb8_528/pz33 |
35/51 |
|
|
hpp12_472 |
97 |
missing |
90/93 |
missing |
- |
|
| hpp12_473 | 259 | 34/57 | 92/93 | hpb8_554/pz5 | 37/63 |
1numbers printed in normal face correspond to >90% identity (identical genes), and numbers in bold face to 40-85% similarity.
2genes hpb8_526 and pz35, as well as hpb8_527 and pz34 share only 61/73% and 54/70% identity/similarity, respectively, to each other, but are equally similar to hpp12_441 and hpp12_439, respectively.
3some ICEHptfs4c islands contain the ICEHptfs4b versions with lower similarities in these sites.
4similarities confined to short regions only.
5no significant similarity detectable, but gene with similar size and orientation present.
6ICEHptfs4c and ICEHptfs3 islands contain fusions of hpp12_454 and hpp12_455.