Table 2.

Chromosomal locations, QTL length, determination coefficients (R ² ), additive effects and LOD values for significant QTL in Karl 92/Ventnor 101 recombinant inbred line (RIL) population

Trait	Chrom	QTL	Flanking marker	Length (cM)	LOD	AD	R 2
TMD4	6A	QHttmd.ksu-6A	Xbarc113, AGCTCG347	6.98	2.58	−0.19	11.90
TMD7	6A	QHttmd.ksu-6A	Xbarc113, AGCTCG347	8.98	3.21	−0.29	14.87
SCC4	6A	QHtscc.ksu-6A	Xbarc113, AGCTCG347	9.18	3.8	1.42	17.57
SCC7	6A	QHtscc.ksu-6A	Xbarc113, AGCTCG347	9.18	3.32	2.34	15.38
TMD4	7A	QHttmd.ksu-7A	Xbarc121, barc49	11.12	4.15	−0.24	19.15
TMD7	7A	QHttmd.ksu-7A	Xbarc121, barc49	9.32	4.08	−0.24	18.86
TMD10	7A	QHttmd.ksu-7A	Xbarc121, barc49	13.05	6.66	−0.48	30.62
SCC4	7A	QHtscc.ksu-7A	Bin754, Bin45	3.72	4.22	1.53	19.53
SCC7	7A	QHtscc.ksu-7A	Xbarc121, barc49	11.42	6.7	3.53	30.84
SCC10	7A	QHtscc.ksu-7A	Xbarc121, barc49	11.42	5.73	4.9	26.59
PMD7	7A	QHtpmd.ksu-7A	Xbarc121, barc49	13.05	7.28	−0.50	33.51
PMD10	7A	QHtpmd.ksu-7A	Xbarc121, barc49	13.05	6.95	−0.46	32.03
SCC4	1B	QHtscc.ksu-1B	gwm18, Bin1130	2.30	2.5	1.07	11.37
SCC7	1B	QHtscc.ksu-1B	gwm18, Bin1130	2.0	2.75	2.01	12.63
TMD4	1D	QHttmd.ksu-1D	Bin747, Bin1596	5.31	3.06	−0.18	14.12
SCC7	1D	QHtscc.ksu-1D	Bin747, Bin1596	11.21	3.58	2.5	16.64
PMD10	1D	QHtpmd.ksu-1D	Bin747, Bin1596	11.21	2.52	−0.28	11.59
PMD7	2B	QHtpmd.ksu-2B	Bin178, Bin81	5.55	3.22	−0.30	10.53
PMD10	2B	QHtpmd.ksu-2B	Bin178, Bin81	6.47	3.75	−0.31	17.22

TMD, thylakoid membrane damage; SCC, SPAD chlorophyll content; PMD plasma membrane damage. AD, additive effect. For TMD and PMD, negative value of AD, and for SCC, positive value of AD indicates the Ventnor allele having a positive effect on the trait.