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. 2014 Apr 24;15:305. doi: 10.1186/1471-2164-15-305

Table 1.

Gene ontology terms for genes differentially expressed between the two house finch populations when comparing expression profiles of the spleen between populations

GO term Annotated Significant Expected Classic p Corrected p
GO:0044281 (BP)
 Small molecule metabolic process
 818
 39
 17
 3.7*10−7
 3.0*10−3
GO:0019752 (BP)
 Carboxylic acid metabolic process
 284
 20
 6
 1.7*10−6
 3.0*10−3
GO:0043436 (BP)
 Oxoacid metabolic process
 284
 20
 6
 1.7*10−6
 3.0*10−3
GO:0006082 (BP)
 Organic acid metabolic process
 285
 20
 6
 1.8*10−6
 3.0*10−3
GO:0042180 (BP)
 Cellular ketone metabolic process
 296
 20
 6
 3.2*10−6
 5.0*10−3
GO:0006520 (BP)
 Cellular amino acid metabolic process
 158
 14
 3
 5.2*10−6
 6.0*10−3
GO:0006725 (BP)
 Cellular aromatic compound metabolic process
 57
 8
 1
 2.3*10−5
 2.4*10−2
GO:0009156 (BP)
 Ribonucleoside monophosphate biosynthetic process
 18
 5
 0
 2.7*10−5
 2.5*10−2
GO:0009124 (BP)
 Nucleoside monophosphate biosynthetic process
 19
 5
 0
 3.6*10−5
 2.9*10−2
GO:0072522 (BP)
 Purine-containing compound biosynthetic process
 66
 8
 1
 6.7*10−5
 4.7*10−2
GO:0009161 (BP)
 Ribonucleoside monophosphate metabolic process
 22
 5
 0
 7.8*10−5
 4.7*10−2
GO:0009127 (BP)
 Purine nucleoside biosynthetic process
 12
 4
 0
 8.4*10−5
 4.7*10−2
GO:0009168 (BP)
 Purine ribonucleoside biosynthetic process
 12
 4
 0
 8.4*10−5
 4.7*10−2
GO:0006563 (BP)
 L-serine metabolic process
 5
 3
 0
 9.0*10−5
 4.7*10−2
GO:0009112 (BP)
 Nucleobase metabolic process
 13
 4
 0
 1.2*10−4
 5.5*10−2
GO:0009123 (BP)
 Nucleoside monophosphate metabolic process
 24
 5
 1
 1.2*10−4
 5.5*10−2
GO:0034654 (BP)
 Compound biosynthetic process
 94
 9
 2
 1.5*10−4
 6.4*10−2
GO:0009113 (BP)
 Purine nucleobase biosynthetic process
 6
 3
 0
 1.8*10−4
 7.3*10−2
GO:0043292 (CC)
 Contractile fiber
 41
 7
 1
 6.0*10−6
 6.0*10−3
GO:0019842 (MF)
 Vitamin binding
 66
 8
 1
 7.9*10−5
 4.2*10−2
GO:0016742 (MF)
 Transferase activity
 5
 3
 0
 9.6*10−5
 4.2*10−2
GO:0016840 (MF)
 Carbon-nitrogen lyase activity
 5
 3
 0
 9.6*10−5
 4.2*10−2
GO:0016741 (MF)
 Transferase activity, transferring one-carbon groups
 108
 10
 2
 1.0*10−4
 4.2*10−2
GO:0003824 (MF)
 Catalytic activity
 2828
 84
 61
 1.2*10−4
 4.2*10−2
GO:0030170 (MF)
 Pyridoxal phosphate binding
 37
 6
 1
 1.2*10−4
 4.2*10−2
GO:0070279 (MF)
 Vitamin B6 binding
 37
 6
 1
 1.2*10−4
 4.2*10−2
GO:0016712 (MF)
 Oxidoreductase activity
 6
 3
 0
 1.9*10−4
 4.6*10−2
GO:0016740 (MF) Transferase activity 959 37 21 2.4*10−4 4.8*10−2

MF, Molecular function; CC, Cellular component. GO term is the identification number for the gene ontology term and given is also the annotated, significant and expected number of genes for each term and the uncorrected (Classic p) and corrected (Corrected p) p-values.