Table 2.
RNA-seq datasets considered in this study
| Genome | Conditions | Description (growth condition) | Code | Accession |
|---|---|---|---|---|
|
H. somni |
1 |
A single nucleotide resolution transcriptome profile |
HS |
GSE29578 |
|
P. gingivalis |
3 |
MIN - Defined minimal medium |
PG1 |
GSE30452 |
| TSB - Trypticase soy broth |
PG2 |
|||
| BAPH - Sheep blood agar |
PG3 |
|||
|
E. coli |
2 |
WT in LB + αMG |
EC1 |
GSM1104387-89 |
| WT in LB –αMG |
EC2 |
GSM1104390-92 |
||
| S. enterica | 2 | WT (15 minutes after αMG stress) |
SE1 |
GSM1104438 |
| WT (30 minutes after αMG stress) | SE2 | GSM1104439 |