Table 2. Triple BAM mpileup Support Filters.
Filter | Somatic | ||
Normal DNA | Tumor DNA | Tumor RNA | |
Min Total Depth | 10 | 1 | 10 |
Min Alt. Depth | NA | 1 | 4 |
Min Alt. Percent | NA | NA | 10% |
Min Avg. Alt. BAQ | NA | 15 | 15 |
Max Alt. Strand Bias | NA | 90% | 90% |
Max Alt. Percent | 10% | NA | NA |
Max Other Percent | 10% | 10% | 2% |
The somatic mutations from the TBM are filtered according to the parameters shown here.