Skip to main content
. 2014 Nov 18;9(11):e111516. doi: 10.1371/journal.pone.0111516

Table 2. Triple BAM mpileup Support Filters.

Filter Somatic
Normal DNA Tumor DNA Tumor RNA
Min Total Depth 10 1 10
Min Alt. Depth NA 1 4
Min Alt. Percent NA NA 10%
Min Avg. Alt. BAQ NA 15 15
Max Alt. Strand Bias NA 90% 90%
Max Alt. Percent 10% NA NA
Max Other Percent 10% 10% 2%

The somatic mutations from the TBM are filtered according to the parameters shown here.