Table 3.
Fold change in gene expression involved in cellular redox
| |
|
PM vs. WT 0 |
PM vs. WT 10 |
PM 0 vs. 10 |
PM 0 vs. 17.5 |
WT 0 vs. 10 |
|||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| ML | LL | ML | LL | ML | LL | ML | LL | ML | LL | ||
| Redox transcriptional repressor | |||||||||||
| Cthe_0422 |
Redox-sensing transcriptional repressor rex |
1.13 |
−1.08 |
7.01 |
5.53 |
1.04 |
−1.02 |
−1.04 |
−1.11 |
−5.96 |
−6.08 |
| Ech-type hydrogenases | |||||||||||
| Cthe_3013 |
hydrogenase expression/formation protein HypE |
1.39 |
1.19 |
3.42 |
2.34 |
−1.90 |
−2.24 |
1.30 |
−1.14 |
1.37 |
−1.03 |
| Cthe_3016 |
[NiFe] hydrogenase maturation protein HypF |
2.34 |
2.42 |
3.10 |
3.62 |
−1.03 |
−1.45 |
1.28 |
1.03 |
1.52 |
1.84 |
| Cthe_3017 |
hydrogenase accessory protein HypB |
2.66 |
3.07 |
2.56 |
3.73 |
1.12 |
−1.15 |
1.08 |
1.06 |
1.63 |
1.97 |
| Cthe_3018 |
hydrogenase expression/synthesis HypA |
2.51 |
3.11 |
2.20 |
3.99 |
1.40 |
−1.07 |
1.22 |
1.20 |
1.92 |
2.27 |
| Cthe_3019 |
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein |
2.89 |
3.12 |
1.77 |
2.98 |
1.14 |
1.03 |
1.54 |
2.02 |
1.87 |
1.08 |
| Cthe_3020 |
NADH-ubiquinone oxidoreductase chain 49 kDa |
2.96 |
3.83 |
1.86 |
3.15 |
1.02 |
−1.03 |
1.55 |
2.07 |
1.64 |
1.18 |
| Cthe_3021 |
ech hydrogenase, subunit EchD, putative |
4.29 |
4.79 |
2.15 |
3.03 |
−1.12 |
−1.09 |
1.16 |
1.71 |
1.79 |
1.46 |
| Cthe_3024 |
NADH/Ubiquinone/plastoquinone (complex I) |
2.04 |
2.26 |
2.83 |
2.10 |
−1.12 |
−1.10 |
−1.17 |
1.05 |
−1.54 |
−1.02 |
| ATP synthase | |||||||||||
| Cthe_2602 |
ATP synthase subunit a |
2.77 |
3.55 |
5.58 |
3.87 |
−1.21 |
1.10 |
−1.35 |
−1.72 |
−2.44 |
1.01 |
| Cthe_2603 |
ATP synthase subunit c |
2.27 |
2.68 |
2.66 |
4.62 |
1.11 |
1.04 |
−1.04 |
−1.22 |
−1.06 |
−1.66 |
| Cthe_2604 |
ATP synthase subunit b |
2.48 |
2.18 |
4.03 |
4.30 |
−1.01 |
1.10 |
−1.23 |
−1.32 |
−1.64 |
−1.80 |
| Cthe_2605 |
ATP synthase F1, delta subunit |
3.55 |
2.04 |
3.86 |
2.95 |
−1.06 |
−1.05 |
−1.77 |
−2.01 |
−1.15 |
−1.53 |
| Cthe_2606 |
ATP synthase F1, alpha subunit |
2.40 |
2.00 |
2.75 |
3.27 |
1.60 |
1.31 |
1.20 |
1.25 |
1.40 |
−1.24 |
| Cthe_2607 |
ATP synthase F1, gamma subunit |
2.63 |
2.09 |
2.06 |
2.95 |
1.17 |
1.20 |
1.09 |
1.49 |
1.50 |
−1.18 |
| Cthe_2608 |
ATP synthase F1, beta subunit |
2.67 |
2.65 |
3.73 |
4.36 |
1.40 |
1.37 |
1.04 |
1.05 |
−1.00 |
−1.20 |
| Cthe_2609 | ATP synthase epsilon chain | 2.94 | 2.87 | 4.11 | 4.79 | 1.12 | 1.33 | −1.21 | −1.11 | −1.24 | −1.26 |
Bold values indicate significantly different levels of expression as determined by ANOVA. For the PM vs. WT in 0% and 10% v/v Populus hydrolysate, a positive/negative value represents a higher/lower expression level in the PM compared to the WT. For the standard medium (0%) versus Populus hydrolysate media (10 or 17.5%) positive/negative values represents higher/lower expression levels in the hydrolysate media compared to standard medium. Values are indicated for samples collected during mid-log (ML) and late-log (LL) growth phases.