Table 2.

Single nucleotide polymorphisms (SNPs) significantly (FDR = 0.05) associated with the traits virus extinction (EX) and infection rate (IR) for the association mapping population with 267 genotypes

Trait	Marker locus	Gene	Chromosome	Position in bp	P value	Allele 1/2	Allele effect 1–2	Proportion of explained ${\mathit{\sigma }}_{\text{g}}^2$ (%)
EX	S10_134718214	GRMZM2G018027	10	134,718,214	2.95e−14	A/G	0.38	20.71
	S10_134718555	GRMZM2G018027	10	134,718,555	9.25e−12	C/T	0.31	16.74
	S10_134718584	GRMZM2G018027	10	134,718,584	1.98e−11	A/G	0.31	16.10
	Simultaneous fit							24.86
IR	S10_134718214	GRMZM2G018027	10	134,718,214	6.23e−13	A/G	28.50	18.14
	S10_134718555	GRMZM2G018027	10	134,718,555	9.31e−08	C/T	19.93	10.67
	S10_134718584	GRMZM2G018027	10	134,718,584	7.59e−11	A/G	24.37	15.20
	S10_136961730	GRMZM5G856306	10	136,961,730	1.02e−06	C/T	19.33	09.30
	S4_228661279	GRMZM2G121790	4	228,661,279	2.47e−07	C/A	28.69	10.00
	Simultaneous fit							33.36