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. 2014 Nov 19;4:7118. doi: 10.1038/srep07118

Table 1. Gene Annotation List for vB_CIBM-P1.

ORF Start Stop Size(aa) Start codon GC content Predicted function Significant matches to proteins in GenBank % aa identity PSI-BLAST E-value
orf1 432 1 144 ATG 0.63 Transcription regulation putative phage repressor [Thioalkalivibrio sp. HL-EbGR7] 42/105 (40%) 2.00E-12
orf2 759 980 74 GTG 0.59 Transcription regulation hypothetic protein    
orf3 1243 1118 42 ATG 0.57   hypothetic protein    
orf4 1514 1209 102 ATG 0.61   hypothetic protein    
orf5 1509 1748 80 ATG 0.63   hypothetic protein    
orf6 1849 2853 335 ATG 0.65 ParB protein, nuclease chromosome partitioning protein parB nuclease [Bartonella tribocorum CIP 105476] 69/243 (28%) 4.00E-12
orf7 2853 3077 75 ATG 0.60   hypothetic protein    
orf8 3067 3762 232 ATG 0.66 DNA methyltransferase? hypothetical phage protein (possible DNA methyltransferase) [Campylobacter phage CPt10] 52/203 (25%) 3.00E-10
orf9 3759 4121 121 ATG 0.67   hypothetic protein    
orf10 4121 4447 109 ATG 0.69   hypothetic protein    
orf11 4441 4668 76 GTG 0.67   hypothetic protein    
orf12 4671 4874 68 ATG 0.68   hypothetic protein    
orf13 4867 5100 78 ATG 0.62   hypothetic protein    
orf14 5097 5291 65 GTG 0.71   hypothetic protein    
orf15 5288 6214 309 ATG 0.66   Gp37Gp68 family protein [Gluconacetobacter diazotrophicus PAl 5] 153/306 (50%) 8.00E-83
orf16 6207 6668 154 ATG 0.68   hypothetical protein PPMP29_gp03 [Pseudomonas phage MP29] 40/107 (37%) 3.00E-13
orf17 6661 8628 656 ATG 0.68 Transposase A Mu DNA binding I gamma subdomain [Xanthobacter autotrophicus Py2] 262/639 (41%) 7.00E-134
orf18 8699 9736 346 ATG 0.64 Transposase B DNA transposition protein gpB [Bordetella petrii DSM 12804] 108/285 (37%) 4.00E-44
orf19 9733 9882 50 GTG 0.73   hypothetic protein    
orf20 9882 10205 108 GTG 0.65 Replication initiation protein DnaA chromosomal replication initiator protein DnaA [Carboxydothermus hydrogenoformans Z-2901] 31/83 (37%) 5.00E-07
orf21 10253 10885 211 ATG 0.68 Modulation of host genes Mu-like prophage protein gp16 [Fulvimarina pelagi HTCC2506] 62/168 (36%) 7.00E-24
orf22 10882 11232 117 ATG 0.67   hypothetic protein    
orf23 11453 11719 89 GTG 0.69   conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] 31/74 (41%) 3.00E-10
orf24 11709 12068 120 ATG 0.63   conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] 35/91 (38%) 2.00E-11
orf25 12129 12704 192 ATG 0.64 Lysozyme phage lysozyme [Rhodobacter capsulatus SB1003] 51/158 (32%) 7.00E-31
orf26 12785 13381 199 ATG 0.66   hypothetic protein    
orf27 13390 13818 143 ATG 0.68   hypothetic protein    
orf28 13815 14249 145 ATG 0.65   hypothetic protein    
orf29 14246 14554 103 ATG 0.67   hypothetical protein HPDFL43_14842 [Hoeflea phototrophica DFL-43] 50/89 (56%) 5.00E-26
orf30 14554 15096 181 ATG 0.68 Transmembrane protein putative ubiquitin-conjugating enzyme E2 transcript variant [Taeniopygia guttata] 55/178 (30%) 2.00E-20
orf31 15093 15671 193 ATG 0.63 Terminase small subunit Mu-like phage gp27 [Fulvimarina pelagi HTCC2506] 76/187 (40%) 3.00E-37
orf32 15889 15683 69 TTG 0.65   hypothetic protein    
orf33 16006 16173 56 TTG 0.64   hypothetic protein    
orf34 16166 17872 569 ATG 0.67 Terminase large subunit Mu-like prophage FluMu protein gp28 [Magnetospirillum magneticum AMB-1] 312/524 (59%) 0
orf35 17994 19565 524 ATG 0.67 Portal Mu-like prophage FluMu protein gp29 [Hoeflea phototrophica DFL-43] 288/530 (54%) 0
orf36 20037 19786 84 ATG 0.62   hypothetic protein    
orf37 20050 21162 371 ATG 0.68 Head morphogenesis bacteriophage Mu GP30-like protein [Roseovarius sp. 217] 189/374 (50%) 9.00E-110
orf38 21239 21730 164 ATG 0.63 Virion morphogenesis virion morphogenesis protein [Roseovarius sp. 217] 78/171 (45%) 3.00E-40
orf39 21805 21939 45 ATG 0.71   hypothetic protein    
orf40 21936 23021 362 GTG 0.67 Protease Mu-like prophage I protein [Hoeflea phototrophica DFL-43] 162/360 (45%) 7.00E-80
orf41 23023 23427 135 ATG 0.67 DNA mismatch repair hypothetical bacteriophage protein [Pseudomonas aeruginosa] 72/134 (53%) 9.00E-40
orf42 23440 24339 300 ATG 0.62 Major head subunit Mu-like prophage major head subunit gpT-like protein [Hoeflea phototrophica DFL-43] 160/299 (54%) 4.00E-115
orf43 24446 25132 229 ATG 0.70   hypothetic protein    
orf44 25136 25564 143 GTG 0.68   Mu-like prophage Flumu protein gp36 [Syntrophus aciditrophicus SB] 57/144 (39%) 1.00E-16
orf45 25561 26019 153 GTG 0.68   hypothetical protein RTM1035_05080 [Roseovarius sp. TM1035] 53/143 (37%) 2.00E-23
orf46 26016 26258 81 ATG 0.73   hypothetic protein    
orf47 26259 27197 313 ATG 0.67   hypothetical protein HPDFL43_14907 [Hoeflea phototrophica DFL-43] 164/309 (53%) 2.00E-113
orf48 27758 27961 68 ATG 0.72   phage protein [Silicibacter sp. TrichCH4B] 30/64 (46%) 5.00E-12
orf49 27261 27590 110 ATG 0.65   hypothetical protein Rsph17025_1309 [Rhodobacter sphaeroides ATCC 17025] 48/109 (44%) 2.00E-21
orf50 27987 30326 780 GTG 0.64 Tail tape measure Tail length tape measure protein [Polymorphum gilvum SL003B-26A1] 42/118 (36%) 5.00E-07
orf51 30323 30991 223 ATG 0.67   hypothetical protein Oant_0252 [Ochrobactrum anthropi ATCC 49188] 57/167 (34%), 6.00E-07
orf52 30975 31583 203 ATG 0.66 Tail fiber protein hypothetical protein Oant_0253 [Ochrobactrum anthropi ATCC 49188] 75/205 (36%) 7.00E-23
orf53 31598 31999 134 ATG 0.69   hypothetic protein    
orf54 31984 34098 705 ATG 0.67 Tail fiber protein H putative tail fiber protein H [Rhizobium phage 16-3] 187/677 (27%) 7.00E-47
orf55 34111 36042 644 GTG 0.65   hypothetical protein [uncultured phage MedDCM-OCT-S09-C299] 124/488 (25%) 2.00E-05
orf56 36076 36867 264 ATG 0.63   hypothetic protein    
orf57 36876 37052 59 GTG 0.61   hypothetic protein