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. 2013 Nov 19;35(3):227–243. doi: 10.1002/jcc.23490

Table 4.

Raw charging contributions Inline graphic [eq. (1)] to binding free energies of guest molecules MAM and ACE to hydrated host molecules CAPO, CHB, CPOS, and CNEG based on values forInline graphic andInline graphic calculated in four different system sizes (boxes of edge lengthsInline graphic, and Ll; section “Simulated guest-host systems”) using LS or BM electrostatic interactions (Table2). Only a subset of the 16 (LS scheme-based) or four (BM scheme-based) possible combinations is reported.Inline graphic andInline graphic denote the box-edge lengths used for simulations of in-water and in-host charging, respectively. For comparison, averagesInline graphic of corrected valuesInline graphic [eq. (21)] over all 16 combinations of box sizesInline graphic and Ll in the case of the LS scheme, over all four combinations of box sizesInline graphic and Ll in the case of the BM scheme, or over the union of the two latter sets (denoted LS+BM) used for in-water and in-host charging, along with associated root-mean-square deviations (rmsd) are also provided.

Guest MAM ACE
Host CAPO CHB CPOS CNEG CAPO CHB CPOS CNEG
Scheme Inline graphic Inline graphic Inline graphic(kJ mol−1)
LS Lss Ll 147.9 112.9 275.4 −88.6 201.7 158.1 −19.0 318.8
LS Lss Lss 168.2 133.9 288.3 −61.6 226.3 183.0 12.1 338.3
LS Ls Ls 169.4 134.5 293.0 −63.6 226.1 182.6 8.7 340.8
LS Lm Lm 170.5 134.9 295.7 −64.5 227.8 184.5 8.5 343.6
LS Ll Ll 173.1 138.1 300.6 −63.4 227.9 184.3 7.2 345.0
BM Lm Ll 164.0 129.4 293.4 −75.0 233.6 189.8 10.5 353.1
BM Lm Lm 165.2 129.6 295.9 −75.2 233.9 190.3 9.3 355.2
BM Ll Ll 165.8 131.2 295.2 −73.2 235.3 191.5 12.2 354.8
Inline graphic (kJ mol−1)
LS Inline graphic Inline graphic 176.0 141.0 310.6 −67.6 228.7 185.6 0.7 354.3
BM Inline graphic Inline graphic 179.8 144.8 312.4 −62.6 229.6 186.6 2.7 353.2
LS+BM Inline graphic Inline graphic 176.7 141.8 310.9 −66.6 228.9 185.8 1.1 354.1
Inline graphic (kJ mol−1)
LS Inline graphic Inline graphic 0.8 0.9 1.9 2.0 0.4 0.5 1.6 3.0
BM Inline graphic Inline graphic 1.4 1.6 1.5 1.4 1.0 1.0 1.0 1.0
LS+BM Inline graphic Inline graphic 1.8 1.9 2.0 2.8 0.6 0.8 1.7 2.7