Table 4.
Raw charging contributions [eq. (1)] to binding free energies of guest molecules MAM and ACE to hydrated host molecules CAPO, CHB, CPOS, and CNEG based on values for
and
calculated in four different system sizes (boxes of edge lengths
, and Ll; section “Simulated guest-host systems”) using LS or BM electrostatic interactions (Table2). Only a subset of the 16 (LS scheme-based) or four (BM scheme-based) possible combinations is reported.
and
denote the box-edge lengths used for simulations of in-water and in-host charging, respectively. For comparison, averages
of corrected values
[eq. (21)] over all 16 combinations of box sizes
and Ll in the case of the LS scheme, over all four combinations of box sizes
and Ll in the case of the BM scheme, or over the union of the two latter sets (denoted LS+BM) used for in-water and in-host charging, along with associated root-mean-square deviations (rmsd) are also provided.
Guest | MAM | ACE | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
Host | CAPO | CHB | CPOS | CNEG | CAPO | CHB | CPOS | CNEG | ||
Scheme | ![]() |
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LS | Lss | Ll | 147.9 | 112.9 | 275.4 | −88.6 | 201.7 | 158.1 | −19.0 | 318.8 |
LS | Lss | Lss | 168.2 | 133.9 | 288.3 | −61.6 | 226.3 | 183.0 | 12.1 | 338.3 |
LS | Ls | Ls | 169.4 | 134.5 | 293.0 | −63.6 | 226.1 | 182.6 | 8.7 | 340.8 |
LS | Lm | Lm | 170.5 | 134.9 | 295.7 | −64.5 | 227.8 | 184.5 | 8.5 | 343.6 |
LS | Ll | Ll | 173.1 | 138.1 | 300.6 | −63.4 | 227.9 | 184.3 | 7.2 | 345.0 |
BM | Lm | Ll | 164.0 | 129.4 | 293.4 | −75.0 | 233.6 | 189.8 | 10.5 | 353.1 |
BM | Lm | Lm | 165.2 | 129.6 | 295.9 | −75.2 | 233.9 | 190.3 | 9.3 | 355.2 |
BM | Ll | Ll | 165.8 | 131.2 | 295.2 | −73.2 | 235.3 | 191.5 | 12.2 | 354.8 |
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LS | ![]() |
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176.0 | 141.0 | 310.6 | −67.6 | 228.7 | 185.6 | 0.7 | 354.3 |
BM | ![]() |
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179.8 | 144.8 | 312.4 | −62.6 | 229.6 | 186.6 | 2.7 | 353.2 |
LS+BM | ![]() |
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176.7 | 141.8 | 310.9 | −66.6 | 228.9 | 185.8 | 1.1 | 354.1 |
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LS | ![]() |
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0.8 | 0.9 | 1.9 | 2.0 | 0.4 | 0.5 | 1.6 | 3.0 |
BM | ![]() |
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1.4 | 1.6 | 1.5 | 1.4 | 1.0 | 1.0 | 1.0 | 1.0 |
LS+BM | ![]() |
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1.8 | 1.9 | 2.0 | 2.8 | 0.6 | 0.8 | 1.7 | 2.7 |