Table 1. Main assembly summary and annotation features of the three F. avenaceum genomes.
Strain | Fa05001 | FaLH03 | FaLH27 |
Sequencing technology | 454 | Hiseq | Hiseq |
Genome size (Mb) | 41.6 | 42.7 | 43.2 |
Sequencing coverage* | 21.6x | 426.6x | 986.2x |
Number of contigs | 110 | 180 | 169 |
Number of scaffolds | 83 | 104 | 77 |
Number of Large Scaffolds (>100 Kb) | 40 | 22 | 18 |
Number of Large Scaffolds (>1 Mb) | 17 | 14 | 11 |
N50 scaffold length (Mb) | 1.43 | 4.11 | 4.14 |
L50 scaffold count | 10 | 5 | 5 |
GC content (%) | 48% | 48% | 48% |
Number of predicted genes | 13217 | 13293 | 13445 |
Average no of genes per Mb | 317.7 | 311.6 | 311.8 |
Mean gene length (base pairs) | 1554 | 1557 | 1552 |
*Post- removal of mitochondrial genome.