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| Pilon | Pilon-frags | |||
| Missed | Called | Missed | Called | |
| Insertion | 11 | 23 | 12 | 22 |
| Substitution | 0 | 5 | 0 | 5 |
| Deletion | 6 | 20 | 10 | 16 |
Variants are divided by type across the rows. Missed variants are those that were annotated in the curation, but were not identified by Pilon. The called variants are those that were annotated in the curation that Pilon accurately identified.
