Skip to main content
. 2014 Nov 19;9(11):e113476. doi: 10.1371/journal.pone.0113476

Table 2. Replication and pooled analysis of the tested IL33 genetic variants in European biopsy-proven GCA patients and controls.

Genotype, N (%) Allele test Recessive model
SNP 1/2 Subgroup (N) 1/1 1/2 2/2 MAF (%) P-value OR [CI 95%]* P-value OR [CI 95%]*
Germany rs3939286 T/C Controls (n = 427) 28 (6.56) 147 (34.43) 252 (59.02) 23.77
GCA (n = 102) 3 (2.94) 37 (36.27) 62 (60.78) 21.08 0.4135 0.86 [0.59–1.24] 0.1741 0.43 [0.13–1.45]
rs7025417 C/T Controls (n = 430) 28 (6.51) 149 (34.65) 253 (58.84) 23.84
GCA (n = 101) 3 (2.97) 41 (40.59) 57 (56.44) 23.27 0.8640 0.97 [0.67–1.39] 0.1833 0.44 [0.13–1.48]
rs7044343 C/T Controls (n = 436) 67 (15.37) 201 (46.10) 168 (38.53) 38.42
GCA (n = 101) 16 (15.84) 51 (50.50) 34 (33.66) 41.09 0.4828 1.12 [0.82–1.53] 0.9054 1.04 [0.57–1.88]
Italy rs3939286 T/C Controls (n = 1109) 94 (8.48) 437 (39.40) 578 (52.12) 28.18
GCA (n = 251) 13 (5.18) 82 (32.67) 156 (62.15) 21.51 2.37E-03 0.70 [0.55–0.88] 0.0830 0.59 [0.32–1.07]
rs7025417 C/T Controls (n = 1106) 29 (2.62) 282 (25.50) 795 (71.88) 15.37
GCA (n = 255) 4 (1.57) 59 (23.14) 192 (75.29) 13.14 0.2023 0.83 [0.63–1.10] 0.3295 0.59 [0.21–1.70]
rs7044343 C/T Controls (n = 1116) 188 (16.85) 520 (46.59) 408 (36.56) 40.14
GCA (n = 252) 46 (18.25) 116 (46.03) 90 (35.71) 41.27 0.6415 1.05 [0.86–1.28] 0.5920 1.10 [0.77–1.57]
Norway rs3939286 T/C Controls (n = 271) 15 (5.54) 100 (36.90) 156 (57.56) 23.99
GCA (n = 108) 6 (5.56) 45 (41.67) 57 (52.78) 26.39 0.4883 1.14 [0.79–1.63] 0.9937 1.00 [0.38–2.66]
rs7025417 C/T Controls (n = 267) 12 (4.49) 91 (34.08) 164 (61.42) 21.54
GCA (n = 111) 5 (4.50) 36 (32.43) 70 (63.06) 20.72 0.8032 0.95 [0.65–1.40] 0.9965 1.00 [0.34–2.92]
rs7044343 C/T Controls (n = 273) 43 (15.75) 135 (49.45) 95 (34.80) 40.48
GCA (n = 108) 14 (12.96) 45 (41.67) 49 (45.37) 33.80 0.0878 0.75 [0.54–1.04] 0.4924 0.80 [0.42–1.53]
Meta-analysis rs3939286 T/C Controls (n = 3790) 327 (8.63) 1510 (39.84) 1953 (51.53) 28.55
GCA (n = 1323) 102 (7.71) 526 (39.76) 695 (52.53) 27.59 0.1358 0.93 [0.84–1.02] 0.2036 0.85 [0.67–1.08]
rs7025417 C/T Controls (n = 3772) 141 (3.74) 1055 (27.97) 2576 (68.29) 17.72
GCA (n = 1338) 27 (2.02) 373 (27.88) 938 (70.10) 15.96 0.0408 0.88 [0.78–0.99] 3.40E-03 0.53 [0.35–0.80]
rs7044343 C/T Controls (n = 3782) 518 (13.70) 1721 (45.51) 1543 (40.80) 36.45
GCA (n = 1325) 190 (14.34) 589 (44.45) 546 (41.21) 36.57 0.3747 1.04 [0.95–1.14] 0.2447 1.12 [0.93–1.34]

*Odds ratio for the minor allele or genotype.

MAF, minor allele frequency; GCA, giant cell arteritis.