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. Author manuscript; available in PMC: 2015 Dec 1.
Published in final edited form as: Proteins. 2014 Oct 30;82(12):3255–3272. doi: 10.1002/prot.24658

Figure 7.

Figure 7

Examples of correlation between the environment scores and RMSD. RMSD of decoys are plotted relative to the residue environment scores for decoy sets of three proteins. Left, MRE (CC80 with γ=1.5); middle, SDE (QU_C2 with γ=2.0); Combined Score with MRE (CC80 with γ=1.5) and SDE (QU_C2 with γ=2.0) with a weight value of 2.05 were used. (A) 2chf from the Rosetta decoy set; Correlation coefficients (CC) are -0.31, -0.67, and -0.62, respectively from left to right. (B) 1gnuA from the I-TASSER decoy set. CC are -0.31, -0.74, and -0.77, respectively. (C) 1csp from the I-TASSER decoy set. CC are -0.50, -0.55, and -0.63, respectively.