Table 4.
SNPs Associated with Antisaccade Error Rate with p Values Less than 10−4
| SNP | Chr | Position | Allele1 | Alelle2 | Beta | SE | t | p | Gene | Class |
|---|---|---|---|---|---|---|---|---|---|---|
| rs4973397 | 2 | 232291471 | G | A | 0.031 | 0.006 | 5.425 | 6.10E-08 | ||
| rs12998237 | 2 | 232276651 | G | A | 0.031 | 0.006 | 5.405 | 6.83E-08 | ||
| rs2290130 | 2 | 232263127 | A | G | 0.029 | 0.006 | 5.114 | 3.28E-07 | B3GNT7 | multiple |
| rs13030174 | 2 | 232271284 | C | A | 0.028 | 0.006 | 4.867 | 1.17E-06 | ||
| rs1868455 | 2 | 232278400 | G | A | 0.023 | 0.005 | 4.597 | 4.40E-06 | ||
| rs13240504 | 7 | 126089319 | A | G | 0.032 | 0.007 | 4.568 | 5.06E-06 | GRM8 | intron |
| rs1840108 | 2 | 181366251 | A | C | 0.040 | 0.009 | 4.544 | 5.66E-06 | ||
| rs2028162 | 11 | 16247475 | G | A | −0.025 | 0.006 | −4.526 | 6.17E-06 | SOX6 | intron |
| rs13235082 | 7 | 126099842 | A | C | 0.032 | 0.007 | 4.493 | 7.20E-06 | GRM8 | intron |
| rs763564 | 12 | 91024916 | A | G | 0.031 | 0.007 | 4.438 | 9.29E-06 | ||
| rs3857348 | 5 | 10297847 | A | G | −0.022 | 0.005 | −4.371 | 1.27E-05 | CMBL | intron |
| rs4621162 | 2 | 232284911 | G | A | 0.022 | 0.005 | 4.361 | 1.32E-05 | ||
| rs4368910 | 7 | 98439700 | A | G | −0.022 | 0.005 | −4.319 | 1.60E-05 | ||
| rs2520497 | 12 | 91022310 | G | A | 0.033 | 0.008 | 4.303 | 1.72E-05 | ||
| rs1913754 | 10 | 82423687 | G | A | 0.023 | 0.005 | 4.261 | 2.07E-05 | ||
| rs9310429 | 3 | 13711684 | G | A | 0.033 | 0.008 | 4.247 | 2.21E-05 | LINC00620 | intron |
| rs11135869 | 8 | 25335354 | G | A | 0.022 | 0.005 | 4.196 | 2.77E-05 | CDCA2 | intron |
| rs583297 | 6 | 153349813 | G | A | −0.021 | 0.005 | −4.196 | 2.77E-05 | RGS17 | intron |
| rs10254771 | 7 | 125960953 | A | G | 0.029 | 0.007 | 4.134 | 3.64E-05 | ||
| rs7136250 | 12 | 131417075 | G | A | −0.021 | 0.005 | −4.121 | 3.84E-05 | ||
| rs6901674 | 6 | 78946797 | A | G | 0.110 | 0.027 | 4.110 | 4.03E-05 | ||
| rs12907899 | 15 | 34151519 | G | A | 0.020 | 0.005 | 4.091 | 4.37E-05 | RYR3 | intron |
| rs6074043 | 20 | 44781380 | A | G | 0.024 | 0.006 | 4.090 | 4.40E-05 | ||
| rs9644041 | 8 | 25321281 | G | A | 0.021 | 0.005 | 4.087 | 4.45E-05 | CDCA2 | intron |
| rs1836789 | 19 | 56489456 | G | A | −0.022 | 0.005 | −4.084 | 4.50E-05 | NLRP8 | intron |
| rs1422812 | 5 | 169069114 | G | A | 0.027 | 0.007 | 4.077 | 4.64E-05 | DOCK2 | intron |
| rs2369271 | 2 | 232289244 | G | A | 0.022 | 0.005 | 4.066 | 4.86E-05 | ||
| rs4770248 | 13 | 22794240 | A | G | 0.022 | 0.005 | 4.049 | 5.23E-05 | LINC00540 | intron |
| rs1061375 | 3 | 13679203 | A | G | 0.022 | 0.005 | 4.038 | 5.49E-05 | FBLN2 | synon codon |
| rs4236538 | 7 | 98434486 | A | G | −0.020 | 0.005 | −4.033 | 5.60E-05 | ||
| rs701265 | 3 | 152554357 | G | A | 0.028 | 0.007 | 4.011 | 6.14E-05 | P2RY1 | synon codon |
| rs6786253 | 3 | 152575924 | G | A | 0.028 | 0.007 | 4.003 | 6.37E-05 | ||
| rs2903455 | 4 | 79095407 | G | A | 0.028 | 0.007 | 4.001 | 6.42E-05 | FRAS1 | intron |
| rs6440825 | 3 | 152572930 | G | A | 0.028 | 0.007 | 3.995 | 6.57E-05 | ||
| rs1415707 | 13 | 98496595 | A | G | −0.020 | 0.005 | −3.993 | 6.64E-05 | ||
| rs6733349 | 2 | 232268312 | G | A | 0.021 | 0.005 | 3.979 | 7.02E-05 | ||
| rs2180477 | 20 | 14759169 | A | G | 0.051 | 0.013 | 3.967 | 7.38E-05 | MACROD2 | intron |
| rs1776438 | 6 | 37553497 | A | G | 0.023 | 0.006 | 3.963 | 7.52E-05 | ||
| rs2922446 | 8 | 134664999 | C | A | −0.020 | 0.005 | −3.961 | 7.57E-05 | ||
| rs10007572 | 4 | 183691547 | G | A | 0.021 | 0.005 | 3.950 | 7.95E-05 | TENM3 | intron |
| rs1595373 | 11 | 16266740 | G | A | −0.024 | 0.006 | −3.946 | 8.07E-05 | SOX6 | intron |
| rs13241603 | 7 | 125901145 | A | C | 0.027 | 0.007 | 3.939 | 8.31E-05 | ||
| rs10282703 | 7 | 125907965 | A | G | 0.027 | 0.007 | 3.939 | 8.31E-05 | ||
| rs744270 | 6 | 89299046 | A | G | 0.041 | 0.010 | 3.916 | 9.14E-05 | ||
| rs17046362 | 12 | 79483041 | A | G | −0.098 | 0.025 | −3.911 | 9.34E-05 | SYT1 | intron |
| rs17005224 | 12 | 79506862 | A | G | −0.098 | 0.025 | −3.911 | 9.34E-05 | SYT1 | intron |
| rs6881702 | 5 | 59277134 | G | A | 0.022 | 0.006 | 3.907 | 9.48E-05 | PDE4D | intron |
| rs4542191 | 1 | 18813445 | G | A | 0.027 | 0.007 | 3.902 | 9.69E-05 | ||
| rs10766314 | 11 | 16285515 | G | A | −0.024 | 0.006 | −3.902 | 9.69E-05 | SOX6 | intron |
| rs3985603 | 11 | 16283644 | A | C | −0.024 | 0.006 | −3.900 | 9.75E-05 | SOX6 | intron |
| rs486390 | 7 | 152783129 | A | G | 0.039 | 0.010 | 3.900 | 9.78E-05 |
Note. SNP = single nucleotide polymorphism; Chr = chromosome on which each SNP is located; Position = location in assembly GRCh37 (hg19). The two alleles at each locus are listed, with the minor allele listed first. Alleles are aligned to the forward strand of assembly GRCh37 (hg19). Beta = RFGLS regression coefficient; SE = standard error; df range = 4,449–4,452. Gene = nearest gene based on the NCBI database. If none is listed, then the SNP is located in an intergenic region. Class = SNP’s NCBI function class; intron = a noncoding variant.