Table 1.

Clinical and Experimental Characteristics of Rhesus Macaques

	ID Numbera	Weeks post Infection	Plasma SIV RNA (log10 copies/mL)	CD4+ T cell count (cells/mm3)	Route of infectionb	MHC class I alleles
Acute	2H2	2	10.35	822	IV	c
	0H7	2	10.39	1436	IV	c
	8G5	2	10.52	1063	IV	c
	r03094	2	6.61	394	R	c
	4440	2	7.60	1736	IV	c
	28827	2	6.86	d	V	c
Chronic	Rh2284-N	12	6.40	374	R	c
	Rh2306-N	12	6.15	291	R	A01, A02, B01
	R03116-N	23	3.78	422	R	A01
	R03103-N	16	5.23	317	R	c
	R03141-N	16	6.00	324	R	c
	2H2	36	8.94	1408	IV	c
	8G5-N	43	8.67	1221	IV	c
	Rh2123-N	56	5.62	d	IV	A01, B30
	R02017-N	88	5.29	d	IV	c
	R02076-N	16	6.76	315	IV	c
	R03111-N	15	6.45	362	R	A02
	Rhau10-N	241	4.11	569	IV	B08
	Rhaxl8-N	78	4.97	334	R	B08
	4440	20	5.43	2099	IV	c
SAIDSe	Rhav84	28	5.52	45	IV	c
	Rhav77	28	5.71	123	IV	c
	R03094	22	6.20	194	R	A01
	0H7-N	20	11.32f	950	IV	c
	2H2-N	44	8.08	92	IV	c
	R97009	26	8.57	158	R	c
	R98019	22	6.51	489	R	c
	R01106-N	81	4.73	142	R	B08
	Rhaj10	26	5.46	53g	R	c

^aNumbers that are followed by the letter “N” indicate animals who were euthanized and from which lymph nodes, spleen and GALT were obtained at necropsy.

^bAbbreviations for route of SIV infection: IV, intravenous, R, intra-rectal, V, intravaginal.

^cIn situ tetramer staining not performed on this animal on this date.

^dTest not done.

^eSimian AIDS (SAIDS) was defined as an animal that had <200 CD4+ T cells/mm³ and/or a SAIDS defining illness.

^fViral load was performed one week prior to this time point.

^gCD4+ T cell count was performed 3 months prior to this time point.