Table 1.
The general information of rice XYLP genes
| Gene a | Subfamily b | RGAP locus c | RAP-DB locus d | Chromosome location e | Size(aa) f | Signal g | GPI h | FL-cDNA i | EST j | MI k | MPSS l |
|---|---|---|---|---|---|---|---|---|---|---|---|
| OsLTPL1 | Clade A | LOC_Os03g26820 | Os03g0385400 | chr03:15307624..15309776 | 178 | √ | √ | √ | √ | √ | √ |
| OsXYLP2 | Clade A | LOC_Os03g26800 | Os03g0385100 | chr03:15300737..15301156 | 139 | √ | - | - | - | - | √ |
| OsXYLP3 | Clade A | LOC_Os07g30590 | Os07g0489000 | chr07:18102558..18103713 | 170 | √ | √ | √ | √ | √ | √ |
| OsXYLP4 | Clade A | LOC_Os07g43290 | Os07g0625800 | chr07:25920699..25922871 | 177 | √ | √ | √ | √ | √ | √ |
| OsXYLP5 | Clade A | LOC_Os03g09230 | Os03g0192600 | chr03:4820699..4822659 | 214 | √ | √ | √ | √ | √ | √ |
| OsXYLP6 | Clade B | LOC_Os03g20760 | Os03g0323900 | chr03:11751959..11753399 | 199 | √ | √ | √ | √ | √ | - |
| OsXYLP7 | Clade B | LOC_Os05g41030 | Os05g0489200 | chr05:24045555..24047844 | 210 | √ | √ | √ | √ | √ | √ |
| OsXYLP8 | Clade B | LOC_Os01g59870 | Os01g0814100 | chr01:34626255..34628601 | 187 | √ | √ | √ | √ | √ | √ |
| OsXYLP9 | Clade C | LOC_Os07g07790 | Os07g0174400 | chr07:3910661..3911056 | 188 | √ | √ | - | √ | √ | √ |
| OsXYLP10 | Clade C | LOC_Os07g07860 | Os07g0174900 | chr07:3947968..3949371 | 171 | √ | √ | - | √ | √ | √ |
| OsXYLP11 | Clade C | LOC_Os03g57990 | Os03g0794000 | chr03:33028009..33029105 | 189 | √ | √ | - | √ | √ | √ |
| OsXYLP12 | Clade C | LOC_Os07g07870 | Os07g0175000 | chr07:3950662..3951180 | 181 | √ | √ | - | - | √ | √ |
| OsXYLP13 | Clade C | LOC_Os03g57970 | Os03g0793800 | chr03:33023016..33023942 | 177 | √ | √ | √ | √ | √ | √ |
| OsXYLP14 | Clade C | LOC_Os07g07930 | Os07g0175600 | chr07:3980211..3981196 | 170 | √ | √ | √ | √ | √ | √ |
| OsXYLP15 | Clade C | LOC_Os04g38840 | Os04g0462200 | chr04:23093153..2309406 | 200 | √ | √ | √ | √ | √ | - |
| OsXYLP16 | Clade D | LOC_Os07g09970 | Os07g0198300 | chr07:5313828..5318057 | 207 | √ | √ | √ | √ | √ | √ |
| OsXYLP17 | Clade D | LOC_Os03g58940 | Os03g0804200 | chr03:33563702..33566613 | 195 | √ | √ | √ | √ | √ | √ |
| OsXYLP18 | Clade D | LOC_Os03g07100 | Os03g0167000 | chr03:3626392..3628578 | 187 | √ | √ | √ | √ | √ | √ |
| OsXYLP19 | Clade D | LOC_Os06g47200 | Os06g0686400 | chr06:28617447..28620310 | 150 | √ | √ | √ | √ | √ | √ |
| OsXYLP20 | Clade D | LOC_Os03g46150 | Os03g0664400 | chr03:26096042..26096992 | 243 | √ | √ | √ | √ | √ | √ |
| OsXYLP21 | Clade D | LOC_Os08g42040 | Os08g0532800 | chr08:26554159..26557021 | 179 | √ | √ | √ | √ | √ | √ |
aSystematic designation given to rice XYLPs.
bOsXYLPs are divided into four clades according to the sequence homology of their protein backbones.
cand dLocus numbers assigned by RGAP (Rice Genome Annotation Project, http://rice.plantbiology.msu.edu/) and RAP-DB (Rice Annotation Project Database, http://rapdb.dna.affrc.go.jp/), which can be converted by ID converter (http://rapdb.dna.affrc.go.jp/tools/converter/).
eChromosomal localization of rice XYLP genes.
fLength of the open reading frame in amino acids.
gN-terminal signal sequence predicted by SignalP 3.0 (http://www.cbs.dtu.dk/services/SignalP/).
hGPI anchor signal predicted by big-PI (http://mendel.imp.ac.at/gpi/plant_server.html).
i ~ lFull-length cDNA; Expressed sequence tag profiles; microarray data; massively parallel signature sequencing.
√, exist; −, not exist.