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. Author manuscript; available in PMC: 2014 Nov 21.
Published in final edited form as: Methods Mol Biol. 2014;1151:165–188. doi: 10.1007/978-1-4939-0554-6_12

Fig. 4.

Fig. 4

Possible causes of spurious or low-quality read alignment (RA) evidence. As described in the text, mismapping of reads to an incorrect reference genome site or local misalignment of bases in correctly mapped reads containing base errors can degrade accuracy and sensitivity when predicting micro-indels and single nucleotide variants.