Table 3.
Chromosome 6A arm-separated assemblies via linear topological contigs (ltc), with at least two BAC clones
| 6AS | 6AL | |||||
|---|---|---|---|---|---|---|
| All | ltc-specific contigsa | Contigs common to fpc (1e−11)b | All | ltc-specific contigsa | Contigs common to fpc (1e−11)b | |
| Total no. of contigs (≥2 clones) | 1217 | 539 | 678 | 1113 | 368 | 745 |
| Singleton | 3136 | – | – | 2581 | – | – |
| Minimum Kb | 42.3 | 42.3 | 98.7 | 47 | 47 | 65.8 |
| Maximum Kb | 9531.6 | 470 | 9531.6 | 3139.6 | 521.7 | 3139.6 |
| Average Kb | 428.526 | 131.033 | 665.029 | 487.887 | 123.336 | 667.961 |
| L50 Kb | 1090.4 | 136.3 | 1386.5 | 944.7 | 126.9 | 1005.8 |
| N50 | 1106 | 351 | 595 | 921 | 249 | 577 |
fpc, fingerprinted contigs.
a
Small contigs (average bacterial artificial chromosomes, BACs/contig = 2.6 for 6AS and 2.8 for 6AL) exclusively made by ltc. The average tag per BAC for the underlying clones was only 15 tags, equal to the value observed for singletons.
b
The average number of tags per BAC for the underlying clones was 34 tags.