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. 2014 Sep 3;23(11):1584–1595. doi: 10.1002/pro.2537

Table 1.

Descriptions and abbreviations for the six fragment libraries generated for our analysis.

Fragment libraries
Abbreviation Number of unique chains Number of structures Number of fragments Description
DYN298 807 42,068 105,112,513 Dynameomics simulations run at 298K. Structures sampled at 1ns intervals for entire duration of each simulation.
DYN498 807 240,814 603,915,700 Dynameomics simulations run at 498K. Structures sampled at 100ps intervals for last 15ns of each simulation.
DYNall 807 282,882 709,028,213 This is a virtual library comprised of the DYN298 and DYN498 libraries.
DYNstart 807 807 1,996,160 Starting structure of each Dynameomics simulation. Structures are solvated and minimized.
PDBxtal 23,144 23,144 99,193,499 Crystal structures from the PDB. Structures were chosen using a PISCES query as described in the text.
PDBnmr 5,412 100,973 180,437,054 NMR spectroscopy structures from the PDB. Structures were chosen using parameters described in the text.