Table 1.
Fragment libraries | ||||
---|---|---|---|---|
Abbreviation | Number of unique chains | Number of structures | Number of fragments | Description |
DYN298 | 807 | 42,068 | 105,112,513 | Dynameomics simulations run at 298K. Structures sampled at 1ns intervals for entire duration of each simulation. |
DYN498 | 807 | 240,814 | 603,915,700 | Dynameomics simulations run at 498K. Structures sampled at 100ps intervals for last 15ns of each simulation. |
DYNall | 807 | 282,882 | 709,028,213 | This is a virtual library comprised of the DYN298 and DYN498 libraries. |
DYNstart | 807 | 807 | 1,996,160 | Starting structure of each Dynameomics simulation. Structures are solvated and minimized. |
PDBxtal | 23,144 | 23,144 | 99,193,499 | Crystal structures from the PDB. Structures were chosen using a PISCES query as described in the text. |
PDBnmr | 5,412 | 100,973 | 180,437,054 | NMR spectroscopy structures from the PDB. Structures were chosen using parameters described in the text. |