. 2014 Nov 18;14:228. doi: 10.1186/s12862-014-0228-6

Table 1.

Summary Illumina sequencing accessions and plastome assembly information of Trifolium species

Species (USDA seed accession) [Section]	*NO trimmed reads (mean length) [SD]**	Plastome length (repetitive %)	GenBank accession	Herbarium voucher
Medicago truncatula	NA	124,033 nt	NC_003119	NA
Gaertn. (NA) [NA]	NA	(1.46%)	NC_003119	NA
T. aureum Pollich (NA)	NA	126,970	NC_024035	NA
[Subg. Chronosemium]	NA	(5.6%^**)	NC_024035	NA
T. grandiflorum Schreb. (NA)	NA	125,628	NC_024034	NA
[Subg. Chronosemium]	NA	(4.3%^**)	NC_024034	NA
T. subterraneum L.	NA	144,763 nt	NC_011828	NA
(NA) [Trichocephalum]		(20.71%)	NC_011828	NA
T. repens L. (NA)	NA	132,120	NC_024036	NA
[Trifoliastrum]	NA	(20.7%^**)	NC_024036	NA
Trifolium boisseri Guss. (PI 369022)	20.5 × 10⁶	125,741 nt	KJ788284*	Sveinsson 14–01 (UBC)
[Subg. Chronosemium]	(95.02) [14.08]	(1.05%)	KJ788284*	Sveinsson 14–01 (UBC)
T. strictum L.	16.7 × 10⁶	125,835 nt	KJ788292*	Sveinsson 14–02 (UBC)
(PI 369147) [Paramesus]	(95.13) [13.98]	(0.71%)	KJ788292*	Sveinsson 14–02 (UBC)
T. glanduliferum Boiss. (PI 296666)	11.5 × 10⁶	126,182 nt	KJ788285*	Sveinsson 14–03 (UBC)
[Paramesus]	(95.16) [13.96]	(0.78%)	KJ788285*	Sveinsson 14–03 (UBC)
T. lupinaster L.	24.8 × 10⁶	135,077 nt	KJ788287*	Sveinsson 14–04 (UBC)
(PI 631632) [Lupinaster]	(94.77) [14.33]	(5.98%)	KJ788287*	Sveinsson 14–04 (UBC)
T. meduseum Blanche	18.9 × 10⁶	140,380 nt	KJ788288*	Sveinsson 14–05 (UBC)
ex Boiss. (PI 369049) [Trichocephalum]	(95.14) [14.01]	(12.83%)	KJ788288*	Sveinsson 14–05 (UBC)
T. pratense L. cv.	22.2 × 10⁶	NA	KJ788290*	Sveinsson 14–07 (UBC)
Arlington (G 27569) [Trifolium]	(94.85) [14.29]	(NA)	KJ788290*	Sveinsson 14–07 (UBC)
T. hybridum L.	21.4 × 10⁶	134,881 nt	KJ788286*	Sveinsson 14–08 (UBC)
(PI 634109, as T. pallescens) [Vesicastrum]	(95.11) [14.04]	(7.86%)	KJ788286*	Sveinsson 14–08 (UBC)
T. semipilosum	29.1 × 10⁶	138,242 nt	KJ788291*	Sveinsson 14-09(UBC)
Fresen. (PI 262238) [Vesicastrum]	(94.80) [14.33]	(10.55%)	KJ788291*	Sveinsson 14-09(UBC)
T. occidentale Coombe	18.6 × 10⁶	133,806 nt	KJ788289*	Sveinsson 14–10 (UBC)
(PI 641363) [Trifoliastrum]	(95.35) [13.80]	(4.64%)	KJ788289*	Sveinsson 14–10 (UBC)

An asterisk marks plastome sequences newly reported in this paper. Only a partial assembly of T. pratense was possible with our data (see text for explanation).

*SD: Standard Deviation.

**Estimations from [10].