Table 1. Gene details and diversity.
Locus | Primer Label | Primer Sequence (5′–3′) | Locus Type | Aligned Length | PICa | Individuals Sequenced |
Kl-2 | Kl2L | TAATACAGAACGGTGGTATGGGTAT | Y | 571 | 63 | 60 |
kl2R | GTTGCTTGGCTAATTCGTAAAGAGT | |||||
Fz4 | Fz4L | GCGTCTTTCTATTGCGCTACTAT | X | 974 | 89 | 55 |
Fz4R | GCTTGTACGGACTGCTGATTATT | |||||
Snf | snfL | GAAGATGCGGGGCCARGCNTTYGT | X | 395 | 81 | 69 |
snfR | GAACAGCATGGACAGCATCATYTCRTT | |||||
Yp1 | YP1D-F | GGACAGGATGAGGTNACCATCATTGT | X | 911 | 50 | 23 |
YP1D-R | TGRTAGCTGTTCTGCTTCTGGGC | |||||
Yp2 | YP2F | CAGCAGCGTTACAATCTCCAGCC | X | 688 | 25 | 22 |
YP2R | CCGAAGGGGCTCTTGGAGTTCAC | |||||
Pds5 | Pds5L | GGATACTTTGTGGACAATTCAGAGT | autosomal | 594 | 87 | 64 |
Pds5R | AGATATTTCACGAACTCTTCAGCAC | |||||
Boss | BossF1 | ACCAGATGCCCTGGGGNGARAA | autosomal | 726 | 136 | 53 |
BossR1 | TGGACAGGGAGCCGCKNARCCARTT | |||||
Ntid | ntidF1 | GGGCCGCATCTTCGARCAYAARTGG | autosomal | 567 | 98 | 69 |
ntidR1 | TGGAGGGGTAGGTGTTCCARCARTA | |||||
Wee | weeL | GCCTGGGCCGAGGAYGAYCAYATG | autosomal | 297 | 40 | 56 |
weeR | TCACGTGGCCCAGGTCNCCDATYTT | |||||
Ef1g | EF1g26F | GCTTWTGAGACCGCTGATGG | autosomal | 844 | 20 | 23 |
EF1g862R | ATCTTRTCGAGACGCTGGAA | |||||
ND2 | 192 | AGCTATTGGGTTCAGACCCC | mito | 523 | 132 | 69 |
732 | GAAGTTTGGTTTAAACCTCC | |||||
ND4 | FN4F | GATACAGGAGCTTCTACATGAGC | mito | 687 | 79 | 23 |
FN4R | GTTTGTGAAGGAGCATTAGG | |||||
COI | 2183 | CAACATTTATTTTGATTTTTTGG | mito | 831 | 201 | 71 |
3037 | TYCATTGCACTAATCTGCCATATTAG | |||||
COII | 3041 | ATGGCAGATTAGTGCAATGG | mito | 765 | 167 | 70 |
3791 | GTTTAAGAGACCAGTACTTG | |||||
16s | 16sF | CCGGTTTGAACTCAGATCACGT | mito | 511 | 27 | 69 |
16sR | CGCCTGTTTAACAAAAACAT | |||||
Total | 9884 | 1295 |
a) Number of parsimony informative characters.