Table 3. Sampling results of GalaxyLoop-PS2 on the three test sets.
Framework | Set (No. loop residue) | No. loops | No. loop sampled within1) | ||
<1.0 Å | <1.5 Å | <2.0 Å | |||
Crystal structure | Set 1 (8) | 20 | 19 | 20 | 20 |
Set 1 (12) | 20 | 13 | 16 | 19 | |
Set 2 (12) | 33 | 20 | 27 | 28 | |
Side chain-perturbed | Set 1 (8) | 20 | 14 | 16 | 17 |
Set 1 (12) | 20 | 8 | 16 | 16 | |
Backbone-perturbed | Set 1 (8) | 20 | 8 | 13 | 16 |
Set 1 (12) | 20 | 6 | 14 | 16 |
Number of loop targets for which at least one structure among the 30 loop conformations (or 50 conformations for 12-residue loops) in the final CSA bank is within a given RMSD value.