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. 2014 Oct 27;15(Suppl 7):S3. doi: 10.1186/1471-2164-15-S7-S3

Table 3.

Drug and/or vaccine targets prioritization parameters and functional annotation of the six essential host homologous putative targets.

Gene and protein codes Official full name Number of cavities with Drug Scorea
> 0.80
Number of cavities with Drug Scorea
> 0.60 and < 0.80
Mol. Wt
(KDa)b
Functionsc Cellular componentd Pathwayse Virulencef
Cp1002_0385
Adk
Adenylate kinase 1 0 24.120 MF: Kinase, Transferase, ATP binding
BP: Nucleotide biosynthesis
EC 2.7.4.3
Cytoplasm Purine metabolism; AMP biosynthesis via salvage pathway Yes

Cp1002_0692
GapA
Glyceraldehyde-3-phosphate dehydrogenase A 2 1 51.918 MF: Oxidoreductase, NAD binding, NADP binding,
BP: glucose metabolic process
EC 1.2.1.13
Cytoplasm Glycolysis/Gluconeogenesis Yes

Cp1002_0728
GlyA
Serine hydroxymethyltransferase 2 1 46.187 MF: Methyltransferase, Transferase
BP: Amino-acid biosynthesis One-carbon metabolism
EC 2.1.2.1
Cytoplasm Amino-acid biosynthesis; glycine biosynthesis; One-carbon metabolism; tetrahydrofolate interconversion. Yes

Cp1002_0738
FumC
Fumaratehydratase class II 2 0 49.767 MF: Lyase
BP: Tricarboxylic acid cycle
EC 4.2.1.2
Cytoplasm Carbohydrate metabolism; tricarboxylic acid cycle;
(S)-malate from fumarate
Yes

Cp1002_1005
Gnd
6-phosphogluconate dehydrogenase 3 5 53.669 MF: Oxidoreductase
BP: Pentose shunt
EC 1.1.1.44
Cytoplasm Carbohydrate degradation; pentose phosphate pathway; No

Cp1002_1042
AspA
Aspartate ammonia-lyase 2 4 52.277 MF: Lyase
EC 4.3.1.1
Cytoplasm Alanine, aspartate and glutamate metabolism, Nitrogen metabolism Yes

aDruggability predicted with DoGSiteScorer software. A druggability score above 0.60 is usually considered, but a score above 0.80 is favored [48].

bMolecular weight was determined using ProtParam tool (http://web.expasy.org/protparam/).

cMolecular function (MF) and biological process (BP) for each target protein was determined using UniProt.

dCellular localization of pathogen targets was performed using CELLO.

eKEGG was used to find the role of these targets in different cellular pathways.

fPAIDB was used to check if the putative targets are involved in pathogen's virulence.