Table 3. BiSA Overlap Correlation Value (OCV) testing.
Domain | Overlap Correlation Value (OCV) | # of overlapsb/total ERα regions in domain |
||
---|---|---|---|---|
Query = ERα Reference = PR |
Query = PR Reference = ERα |
Query = ERα Reference = PR (600 bp long)a |
||
Whole Genome | 0.33 | 0.26 | 0.33 | 4,344/18,560 |
500 bp upstream, downstream of TSS | 0.3 | 0.17 | 0.22 | 112/419 |
1 kb upstream, downstream of TSS | 0.28 | 0.18 | 0.25 | 157/647 |
5 kb upstream of TSS | 0.3 | 0.21 | 0.28 | 304/1,224 |
5 kb upstream, downstream of TSS | 0.31 | 0.22 | 0.3 | 522/2,147 |
10 kb upstream, downstream of TSS | 0.31 | 0.22 | 0.3 | 929/3,666 |
45 kb–55 kb upstream of TSS | 0.29 | 0.21 | 0.28 | 449/1,929 |
95 kb–105 kb upstream of TSS | 0.31 | 0.24 | 0.3 | 514/2,017 |
90 kb–110 kb upstream of TSS | 0.31 | 0.23 | 0.3 | 878/3,495 |
Notes.
PR regions are fixed to 600 bp long by cutting off 300 bp on both sides of peak summits.
Number of overlaps in this column is reported by selecting ERα as the query and PR as the reference dataset.