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. 2014 Apr 10;3(2):309–340. doi: 10.3390/pathogens3020309

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© 2014 by the authors; licensee MDPI, Basel, Switzerland.

This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).

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KK strain regions of genome plasticity (RGPs) varying between KK strains using WallGene facility. KK1 genome was chosen as the reference genome. The following color codes are used for genes in WallGene: (1) genes of the reference organism with a homologous gene in at least one of the non-reference genomes have an attributed color (except black, grey, or white) at random; (2) genes of the reference genome with no homology at all are black; (3) genes of non-reference genomes with exactly one homology in the reference genome are the same color as the homologous gene; (4) genes of non-reference genome with more than one homology in the reference genome are white; (5) genes of non-reference genomes with no homology in the reference genome are dark grey. If homology links are displayed, those genes are hidden.