Table 5.
Summary of genes expressed preferentially in TCs, as compared with others
| Compared pairs/fold down-regulated | >0 | >1 | >4 | ||||
|---|---|---|---|---|---|---|---|
| TC5 versus others | 79 | 12 | 0 | ||||
| TC10 versus others | 137 | 22 | 1 | ||||
| TCs versus others | 59 | 9 | 0 | ||||
| Gene symbol | Folds (TC5 versus others/TC10 versus others) | ||||||
| Fibroblast | Stem | ATII | CD8_T_BL | CD8_T_LL | Basal_cell | Duct_cell | |
| (A) Genes down-regulated between 0-and 1-folds in TCs as compared with others | |||||||
| 1700027A23Rik | 0.9/1.57 | 0.08/0.46 | 162.04/220.27 | 4.95/7.07 | 0.43/0.94 | 28.1/38.49 | 8.2/11.48 |
| 2810403A07Rik | 0.81/1.11 | 0.7/0.99 | 0.47/0.72 | 3.33/4.07 | 4.16/5.04 | 1.31/1.7 | 0.96/1.3 |
| 4932438A13Rik | 1.12/1.11 | 0.9/0.9 | 4.4/4.39 | 76.24/75.99 | 78.16/77.9 | 9.48/9.44 | 8.12/8.09 |
| 4933421E11Rik | 1.61/2.74 | 0.22/0.74 | 0.3/0.87 | 5.03/7.64 | 4.6/7.02 | 2.41/3.89 | 0.14/0.64 |
| A530020G20Rik | 0.13/0.92 | 0.02/0.73 | 6.3/11.39 | 1.91/3.94 | 2.91/5.64 | 2.4/4.77 | 1.14/2.63 |
| Acadm | 5.66/5.92 | 0.22/0.27 | 4.5/4.72 | 6.8/7.1 | 4.87/5.09 | 6.25/6.53 | 5.1/5.33 |
| Adh6a | 0.46/0.67 | 0.44/0.65 | 5.68/6.63 | 8.32/9.65 | 11.57/13.37 | 50.97/58.39 | 25.27/29.03 |
| Ahcyl1 | 0.62/0.88 | 0.14/0.32 | 1.5/1.91 | 1.14/1.49 | 0.51/0.76 | 2.4/2.95 | 1.9/2.38 |
| Alx3 | 1.08/1.53 | 1.35/1.87 | 0.45/0.77 | 0.95/1.38 | 5.61/7.05 | 0.82/1.22 | 1.64/2.21 |
| Atp11b | 0.44/0.93 | 0.99/1.66 | 2.2/3.29 | 28.57/38.63 | 22.24/30.15 | 10.08/13.85 | 15.11/20.59 |
| Car3 | 0.25/0.29 | 0.04/0.07 | 3.72/3.87 | 4.07/4.23 | 6.87/7.12 | 40.74/42.05 | 22.72/23.47 |
| Clcc1 | 1.62/2.56 | 0.03/0.39 | 0.08/0.47 | 0.81/1.45 | 0.7/1.31 | 3.29/4.83 | 3.25/4.77 |
| Cryz | 3.65/6.13 | 3.67/6.15 | 0.91/1.92 | 0.17/0.79 | 0/0.53 | 0.51/1.32 | 2.14/3.8 |
| Ctso | 0.22/0.15 | 1.18/1.05 | 151.36/142.4 | 336.91/317.03 | 271.25/255.24 | 245.94/231.42 | 92.66/87.15 |
| Gnat2 | 1.35/1.57 | 0.19/0.3 | 1.09/1.29 | 2.4/2.72 | 4.24/4.73 | 8.71/9.63 | 1.89/2.17 |
| Gpsm2 | 1.89/2.66 | 1.39/2.03 | 0.36/0.72 | 3.42/4.59 | 5.15/6.78 | 14.01/17.99 | 18.95/24.24 |
| Hax1 | 0.16/0.6 | 0.66/1.3 | 1.25/2.1 | 0.9/1.62 | 0.94/1.68 | 0.6/1.21 | 0.84/1.54 |
| Hltf | 0.31/0.45 | 0.45/0.61 | 3.26/3.75 | 18.55/20.78 | 18.24/20.44 | 7.82/8.83 | 3.57/4.09 |
| Hps3 | 1.39/1.42 | 0.56/0.58 | 0.8/0.82 | 8.25/8.37 | 6.09/6.18 | 2.97/3.02 | 0.26/0.27 |
| Ints3 | 0.83/0.94 | 0.23/0.3 | 27.92/29.65 | 13.8/14.68 | 6.12/6.54 | 23.06/24.5 | 26.27/27.9 |
| Isg20l2 | 0.09/0.62 | 0.06/0.57 | 2.61/4.35 | 4.77/7.55 | 3.23/5.27 | 5.9/9.22 | 6.17/9.62 |
| Lass2 | 0.06/0.12 | 0.01/0.07 | 5.54/5.9 | 2.13/2.3 | 1.64/1.79 | 1.12/1.23 | 0.41/0.49 |
| Lrrc40 | 0.4/0.16 | 0.42/0.18 | 102.03/84.89 | 256.01/213.26 | 257.71/214.68 | 537.73/448.12 | 349.78/291.43 |
| Lrrcc1 | 0.1/0.63 | 0.19/0.77 | 0.6/1.37 | 2.23/3.8 | 1.26/2.35 | 5.2/8.21 | 2.45/4.13 |
| Mfsd8 | 0.71/0.3 | 0.45/0.11 | 11.71/8.67 | 24.91/18.72 | 19.66/14.72 | 32.59/24.56 | 33.42/25.19 |
| Mrpl24 | 0.64/1.57 | 0.06/0.66 | 1.1/2.27 | 3.11/5.41 | 1.92/3.56 | 1.85/3.45 | 1.82/3.41 |
| Mrpl9 | 0.29/0.47 | 0.44/0.64 | 3.16/3.73 | 7.18/8.3 | 5.33/6.19 | 8.23/9.48 | 7.87/9.08 |
| Ndufb5 | 1/1.86 | 0.01/0.44 | 2.17/3.55 | 2.34/3.79 | 0.88/1.69 | 2.78/4.42 | 2.95/4.66 |
| Odf2l | 1.26/1.48 | 0.17/0.29 | 5.61/6.26 | 11.82/13.08 | 7.95/8.83 | 44.13/48.56 | 37.95/41.78 |
| Papss1 | 1.13/1.25 | 0.44/0.52 | 2.44/2.62 | 1.53/1.66 | 0.28/0.34 | 1.73/1.88 | 1.64/1.78 |
| Pgrmc2 | 1.11/1.55 | 0.08/0.31 | 4.75/5.96 | 1.45/1.97 | 2/2.62 | 29.73/36.17 | 15.37/18.8 |
| Plk4 | 0.46/0.88 | 0.71/1.2 | 2.33/3.29 | 11.64/15.29 | 12.8/16.79 | 7.3/9.69 | 12.53/16.43 |
| Prpf38b | 1.18/0.93 | 0.68/0.49 | 11.25/9.81 | 50/44 | 66.2/58.3 | 44.75/39.37 | 34.78/30.58 |
| Rabggtb | 0.81/0.52 | 1.09/0.75 | 8.12/6.64 | 53.93/45.01 | 57.59/48.07 | 37.82/31.52 | 48.92/40.81 |
| Rapgef2 | 0.29/0.68 | 0.63/1.11 | 2.8/3.92 | 10.47/13.85 | 8.15/10.86 | 0.24/0.6 | 0.61/1.09 |
| Rps4x | 0.11/0.67 | 0.62/1.45 | 0.39/1.1 | 0.85/1.79 | 1.99/3.51 | 0.67/1.53 | 0.54/1.32 |
| Sars | 3.16/4.85 | 1.32/2.27 | 1.03/1.86 | 0.4/0.98 | 0.09/0.54 | 0.41/0.99 | 0.3/0.83 |
| Setdb1 | 0.25/0.87 | 0.6/1.39 | 0.03/0.55 | 1.29/2.42 | 1.07/2.1 | 2.73/4.58 | 1.8/3.19 |
| Siah2 | 1.29/1.68 | 1.79/2.27 | 3.92/4.77 | 0.21/0.42 | 0.87/1.19 | 3.28/4.02 | 3.03/3.72 |
| Slc33a1 | 0.75/0.58 | 0.72/0.55 | 5.56/4.91 | 2.19/1.87 | 1.75/1.48 | 3.02/2.62 | 0.75/0.58 |
| Smc4 | 0.07/0.85 | 0.89/2.26 | 0.12/0.94 | 14.46/25.7 | 14.77/26.25 | 2.22/4.56 | 6.28/11.58 |
| Sohlh2 | 0.02/0.11 | 0.08/0.17 | 1.69/1.93 | 0.91/1.07 | 1.86/2.11 | 1.58/1.8 | 1.85/2.1 |
| Spata5 | 0.06/0.88 | 0.21/1.16 | 0.19/1.12 | 0.32/1.36 | 0.4/1.49 | 1.15/2.83 | 1.51/3.47 |
| Syt6 | 0.23/0.6 | 0.21/0.57 | 0.15/0.5 | 0.55/1.02 | 0.43/0.87 | 1.27/1.96 | 0.29/0.69 |
| Tbl1xr1 | 2.36/1.6 | 0.89/0.47 | 2.59/1.79 | 4.02/2.9 | 3.66/2.61 | 16.91/12.89 | 13.56/10.29 |
| Txnip | 0.77/0.21 | 1.35/0.6 | 54.04/36.58 | 107.86/73.33 | 65.79/44.6 | 36.39/24.53 | 26.15/17.53 |
| Ubqln4 | 0.18/0.58 | 0.21/0.63 | 11.94/16.36 | 5.82/8.15 | 2.66/3.91 | 28.73/38.87 | 40.6/54.79 |
| Wdr77 | 0.14/0.7 | 0.97/1.92 | 3.67/5.93 | 1.52/2.74 | 0.79/1.66 | 2.28/3.88 | 2.96/4.88 |
| Ythdf3 | 0.22/0.54 | 0.64/1.07 | 3.08/4.17 | 6.8/8.87 | 6.44/8.41 | 3.68/4.92 | 3/4.06 |
| Zzz3 | 0.1/0.64 | 0.73/1.58 | 0.1/0.64 | 3.91/6.33 | 3.67/5.96 | 1.29/2.42 | 0.6/1.39 |
| (B) Genes down-regulated between 1-and 4-folds in TCs as compared with others | |||||||
| 1700013F07Rik | 6.5/7.08 | 1.64/1.84 | 34.73/37.52 | 2.1/2.34 | 7.8/8.48 | 29.96/32.38 | 47.84/51.65 |
| Amy1 | 2.81/3.86 | 8.06/10.55 | 9.44/12.32 | 7.37/9.67 | 14.79/19.13 | 31.07/39.88 | 24.64/31.68 |
| Anp32e | 8.69/11.5 | 2.79/3.89 | 121.76/157.32 | 245.2/316.52 | 243.57/314.42 | 356.1/459.55 | 464.63/599.52 |
| Dnase2b | 2.08/2.96 | 1.85/2.67 | 1.08/1.68 | 1.08/1.67 | 9.48/12.48 | 10.22/13.44 | 6.68/8.87 |
| Fmo5 | 3.8/6 | 3.36/5.35 | 3.52/5.58 | 4.08/6.4 | 1.75/3.01 | 21.33/31.55 | 5.4/8.33 |
| Pde5a | 4.09/2.99 | 3.94/2.87 | 4.58/3.37 | 39.25/30.54 | 12.26/9.39 | 44.99/35.04 | 15.96/12.29 |
| Phf17 | 1.24/1.76 | 3.48/4.52 | 1.04/1.52 | 3.4/4.42 | 3.67/4.75 | 11.3/14.14 | 4.48/5.75 |
| Rwdd3 | 2.98/4.43 | 2.52/3.8 | 2.98/4.43 | 14.07/19.53 | 10.16/14.21 | 28.88/39.73 | 8.77/12.31 |
| Trim33 | 1.93/5.56 | 1.06/3.62 | 4.2/10.64 | 26.9/61.48 | 17.78/41.07 | 3.1/8.17 | 2.63/7.13 |