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. 2014 Nov 25;11(11):e1001760. doi: 10.1371/journal.pmed.1001760

Table 2. Microbiological results by study arm for both the ITT and per protocol analyses.

Result ITT Analysis Per Protocol Analysis
Xpert Routine p-Value Xpert Routine p-Value
N 982 1,003 882 1,063
Sputum available 964 (98.2%) 981 (97.8%) 0.732 882 1,063
Xpert
Xpert available 823 (85.4%) 59 (6.0%) 882
Xpert negative 619 47 666
Xpert indeterminate 5 0 5
Xpert positive (percent of Xpert available) 199 (24.2%) 12 (20.3%) 0.469 211 (23.9%)
Sputum smear microscopy
Smear available 676 (68.8%) 958 (95.5%) 571 (64.7%) 1,062 (99.9%)
Smear negative 593 867 508 951
Smear positive (percent of smear available) 83 (12.3%) 91 (9.5%) 0.076 63 (11.0%) 111 (10.5%) 0.713
Culture
Culture available 474 (48.3%) 459 (45.8%) 0.476 418 (47.4%) 515 (48.5%) 0.493
Contaminated/lost 29 (6.1%) 29 (6.3%) 29 (6.8%) 29 (5.6%)
Non-tuberculous mycobacteria 8 2 7 3
Culture negative 318 319 281 356
Culture positive (percent of valida culture results) 119 (27.2%) 109 (25.5%) 0.533 101(26.4%) 127 (26.3%) 0.963
Bacteriologically confirmed TB (Xpert, smear, or culture) 257 (26.2%) 167 (16.7%) <0.001 235 (26.6%) 189 (17.8%) <0.001

Data are n (percent).

a

Excludes cultures that are contaminated.