Table 1. L. acidophilus isolates and genome sequences examined in this study.
| Isolate | Strain aliases | Year | Isolate source | Genome status | Genome source/reference |
|---|---|---|---|---|---|
| Culture collection isolates | |||||
| LMG 9433T a,b | ATCC 4356; LMG 13550 | 1964 | Human | draft | This study |
| LMG 11428 a,b | ATCC 832; Rettger 4B | 1922 | Rat | draft | This study |
| LMG 11466 | ATCC 13651; DSM 9126 | 1960 | National Institute for Research in Dairying (Reading, UK) | draft | This study |
| LMG 11467 | ATCC 314; L. F. Rettger 43 | 1920 | Human | draft | This study |
| LMG 11469 | ATCC 4355; Kulp R-1-1 | 1924 | Rat | draft | This study |
| LMG 11470 a,b | ATCC 4796 | 1980 | - | draft | This study |
| LMG 11472 | ATCC 9224 | 1950 | - | draft | This study |
| LMG 13550T a | LMG 9433T; ATCC 4356 | 1964 | Human | draft | This study |
| LAB 283a | LMG 11430; ATCC 4357; Kulp strain PAK | 1963 | U Gent | draft | This study |
| LAB 66 | LMG 11428 | 1922 | U Gent | draft | This study |
| LAB 69 | - | U Gent | draft | This study | |
| LAB 76 | LMG 11428 | 1922 | U Gent | draft | This study |
| CIP 76.13T | LMG 9433T; ATCC 4356 | 1964 | Human | draft | 16 |
| DSM 20242 | ATCC 4357; LMG 11430; LAB 283 | 1963 | - | draft | 16 |
| DSM 9126 | ATCC 13651; LMG 11466 | 1960 | - | draft | 16 |
| ATCC 4796 | LMG 11470 | 1980 | Human Microbiome Project (HMP) | draft | NCBI RefSeq Assembly [ACHN01000000] |
| ERR203994T | ATCC 4356T | - | - | draft | NCBI Short Read Archive |
| Commercial isolates | |||||
| C21 | 2008 | Commercial isolate | draft | This study | |
| C46 | 2008 | Commercial isolate | draft | This study | |
| C47 | 2008 | Commercial isolate | draft | This study | |
| C49 | 2008 | Commercial isolate | draft | This study | |
| CUL 21a,b | NCIMB 30156 | 2004 | Commercial isolate | draft | This study |
| CUL 60a,b | NCIMB 30157 | 2004 | Commercial isolate | draft | This study |
| CulT2 | 2008 | Commercial isolate | draft | This study | |
| HBCA | 2008 | Probiotic product | draft | This study | |
| NCFMa,b(isolate) | Derived from LMG 9433T | 1975 | Commercial probiotic | draft | This study |
| Rm 344 a,b | 2012 | Commercial isolate | draft | This study | |
| Rm 345a | 2012 | Commercial isolate | draft | This study | |
| NCFM (Reference genome) | Derived from LMG 9433T | 1970 | Derived from LMG 9433 | complete | NCBI RefSeq [CP000033] 23 |
| CIRM-BIA 442 | - | Dairy product | draft | 16 | |
| CIRM-BIA 445 | - | Dairy product | draft | 16 | |
| La-14 | - | Danisco/DuPont (Brabrand, Denmark) | complete | 15 | |
| Unknown isolate | |||||
| ERR256998 | FLI007 | - | - | draft | NCBI Short Read Archive |
aIsolate phenotype examined by MALDI-TOF analysis.
bIsolate growth kinetics examined by Bioscreen C analysis.